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Job DescriptionP21693
Confidence100.00%DateWed Jan 25 15:20:42 GMT 2012
Rank31Aligned Residues317
% Identity16%Templatec3rc8A_
PDB info PDB header:hydrolase/rnaChain: A: PDB Molecule:atp-dependent rna helicase supv3l1, mitochondrial; PDBTitle: human mitochondrial helicase suv3 in complex with short rna fragment
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.........70.........80.........90.........100......
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Query Sequence  TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTL
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Template Sequence  IPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFS. . . . . . . AKSGVYCGPLKLLAHEIFEKSNAA. . . . . GVPCDLV
Template Known Secondary structure 
GGGG
TS


SSSSSTT.......SSSSST.....T

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   187..190.........200.........210.........220... ......230.........240....... ..250....
 
   107..110.........120.........130.........140.........150.........160.........170.........180......
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Query Sequence  CGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT
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Template Sequence  TGEERVTVQPN. . GKQASHVSCTVEMC. . . . . . . . SVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPA
Template Known Secondary structure 
SS


SSS..S


SGGG
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SSS
GGGGG
TTT

GG
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   255....260..... ....270......... 280.........290.........300.........310.........320....
 
   187..190.........200.........210.........220.........230.........240.........250.........260......
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Query Sequence  WPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQ
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Template Sequence  AIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLDNL. . . . . . . . . . . . . . RPGDCIVCFSKNDIYSVSRQIEIRGL
Template Known Secondary structure  GT




SS

SS


SSTT
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SSTT
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   325....330.........340.........350.........360.... .....370.........380.........390
 
   267..270.........280....... ..290.........300.........310........ .320.........330...... ..
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Query Sequence  SALSLHGDLEQRDRDQTLVRF. . ANGSARVLVATDVAARGLDIKSLELVVNFEL. . . AWDPEVHVHRIGRTARAG. . . NS
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Template Sequence  ESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLS. IRRIIFYSLIKEPITTSQALQIAGRAGRFSSRFKE
Template Known Secondary structure 

TTS

TT
S


GGGGSS



.BSS
SB

B

TTB


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   391........400.........410.........420.........430.... .....440.........450.........460.........
 
   339340.........350.........360.........370.........380.
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Query Sequence  GLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAE
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Template Conservation 
 
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Template Sequence  GEVTTMN. HEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAY
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   481...... ..490.........500.........510.........520..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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