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Job DescriptionP21693
Confidence100.00%DateWed Jan 25 15:20:42 GMT 2012
Rank10Aligned Residues377
% Identity27%Templatec3pexA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:atp-dependent rna helicase dbp5; PDBTitle: s. cerevisiae dbp5 l327v bound to gle1 h337r and ip6
Resolution4.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40 .........50.........60.........70.........
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Query Sequence  TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAG. . KDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCP
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Template Sequence  KSFDELG. LAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP
Template Known Secondary structure  SSTTTTT.

TT

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   92...... .100.........110.........120.........130.........140.........150.........160.........170
 
   80.........90.........100.........110.........120.........130.........140.........150.........
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Query Sequence  TRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRML
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Template Sequence  SRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK. . . . . QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNML
Template Known Secondary structure  STTSS


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   171........180.........190.........200..... ....210.........220.........230.........240.....
 
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Query Sequence  DMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLH
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Template Sequence  DQQGLGDQCIRVKRFLPKDTQLVLFSATFADA. . . VRQYAKKIVPNANTLELQDAIKQLYMDCKNEADKFDVLTELYGVM
Template Known Secondary structure  STTTS
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   246...250.........260.........270....... ..280.........290.........300.........310.........320..
 
   240.........250.........260.........270.........280.........290.........300.........310.........
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Query Sequence  QPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELA
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Template Sequence  TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLP
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   329330.........340.........350.........360.........370.........380.........390.........400........
 
   320 .........330.........340.........350.........360.........370.........380........
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Query Sequence  W. . . . . . DPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCID
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Template Sequence  TLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVP. TDDWDEVEKIVKKVLKD
Template Known Secondary structure  B
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   409410.........420.........430.........440.........450.........460..... ....470.........480..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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