Job Description P21693 Confidence 99.63% Date Wed Jan 25 15:20:42 GMT 2012 Rank 109 Aligned Residues 186 % Identity 19% Template c3llmB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase a; PDBTitle: crystal structure analysis of a rna helicase Resolution 2.80 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		P	P	A	Q	L	T	N	L	N	E	L	G	Y	L	T	M	T	P	V	Q	A	A	A	L	P	A	I	L	A	G	K	D	V	R	V	Q	A	K	T	G	S	G	K	T	A	A	F	G	L	G	L	L	Q	Q	I	D	A	S	L	F	Q	T	.	.	Q	A	L	V	L	C	P	T	R	E	L	A	D	Q	V	A
Query Conservation																																																																.	.
Alig confidence																																																																.	.
Template Conservation
Template Sequence		D	H	D	L	Q	A	I	L	Q	E	R	E	L	L	P	V	K	K	F	E	S	E	I	L	E	A	I	S	Q	N	S	V	V	I	I	R	G	A	T	G	C	G	K	T	T	Q	V	P	Q	F	I	L	D	D	F	I	Q	N	D	R	A	A	E	C	N	I	V	V	T	Q	P	R	R	I	S	A	V	S	V	A
Template Known Secondary structure														T	S	G	G	G	G	G												S								T	T	S	S																T	T		G	G	G								S	S
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		G	E	L	R	R	L	A	R	F	L	P	N	T	K	I	L	T	L	C	G	G	Q	P	F	G	M	Q	R	D	S	L	Q	H	A	P	H	I	I	V	A	T	P	G	R	L	L	D	H	L	Q	K	G	T	V	S	L	D	A	L	N	T	L	V	M	D	E	A	D	.	R	M	L	D	M	G	F	S	D	A	I
Query Conservation																																																																						.
Alig confidence																										.	.	.	.	.																							.	.	.															.
Template Conservation																										.	.	.	.	.																							.	.	.
Template Sequence		E	R	V	A	F	E	R	G	E	E	P	G	K	S	C	G	Y	S	V	R	F	E	S	I	.	.	.	.	.	L	P	R	P	H	A	S	I	X	F	C	T	V	G	V	L	L	R	K	L	E	A	.	.	.	G	I	R	G	I	S	H	V	I	V	D	E	I	H	E	R	D	I	N	T	D	F	L	L	V	V
Template Known Secondary structure							T	T	T			T	T	S	S						T	T				.	.	.	.	.				S	S	S																	.	.	.			T	T									T	T	S
Template Predicted Secondary structure																										.	.	.	.	.																							.	.	.
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.						.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500				.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	V	I	R	F	A	P	A	S	R	Q	T	L	L	F	S	A	T	W	P	E	A	I	A	A	I	S	G	R	V	Q	R	D	P	L	A	I	E
Query Conservation
Alig confidence																						.	.
Template Conservation																						.	.
Template Sequence		L	R	D	V	V	Q	A	Y	P	E	V	R	I	V	L	X	S	A	T	I	.	.	D	T	S	X	F	C	E	Y	F	F	N	C	P	I	I	E	V
Template Known Secondary structure										T	T	S							S	S	S	.	.									T	T	S
Template Predicted Secondary structure																						.	.
Template SS confidence
		527	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.			.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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