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Job DescriptionP21693
Confidence100.00%DateWed Jan 25 15:20:42 GMT 2012
Rank18Aligned Residues339
% Identity21%Templatec3l9oA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome
Resolution3.39 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.........70.........80.........90.........100
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Query Sequence  LGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPN
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Template Sequence  YPFT. LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN. . . KQRVIYTSPIKALSNQKYRELLAEFGD. . .
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   146... 150.........160.........170.........180.........190. ........200.........210........
 
   101........110.........120.........130.........140.........150.........160.........170.........180
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Query Sequence  TKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQT
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Template Sequence  . . VGLMTGDITIN. . . . . . . PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRY
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   219220......... 230.........240.........250.........260.........270.........280.........
 
   181........190....... ..200.........210.........220..... ....230...
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Query Sequence  LLFSATWPEAIAAISGR. VQRDPLAIEIDSTDALPPIEQQFYETSS. . . . . . . . . . . . . . . . . . . . . . . . . . KGKIPLLQ
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Template Sequence  VFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIAKGDIYKIV
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   290.........300.........310.........320.........330.........340.........350.........360.........
 
   234.....240.........250.........260..... ....270........
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Query Sequence  RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QSALSLHGDLEQR
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Template Sequence  KMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPI
Template Known Secondary structure  TT


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   399400.........410.........420.........430.........440.........450.........460.........470........
 
   279280.........290.........300.........310........ .320.........330...... ...340.......
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Query Sequence  DRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFEL. . . . . . . . . AWDPEVHVHRIGRTARAG. . NSGLAISFCAP
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Template Sequence  LKEVIEILFQEGFLKVLFATETFSIGLNMK. . . TVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDE
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   483......490.........500.........510.. .......520.........530.........540.........550.........
 
   348 .350.........360.........370........
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Query Sequence  E. EAQRANIISDMLQIKLNWQTPPANSSIATL
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Template Sequence  KMEPQVAKGMVKGQADRLDSAFHLGYNMILNL
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   562.......570.........580.........590...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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