Phyre 2 alignment of P21693 with c3kx2A

Job Description P21693
Confidence 100.00% Date Wed Jan 25 15:20:42 GMT 2012

Rank 28 Aligned Residues 339

% Identity 19% Template c3kx2A_

PDB info PDB header:hydrolase Chain: A: PDB Molecule:pre-mrna-splicing factor atp-dependent rna PDBTitle: crystal structure of prp43p in complex with adp

Resolution 2.20 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence	M	T	A	F	S	T	L	N	V	L	P	P	A	Q	L	T	N	L	N	E	L	G	Y	L	T	M	T	P	V	Q	A	A	A	L	P	A	I	L	A	G	K	D	V	R	V	Q	A	K	T	G	S	G	K	T	A	A	F	G	L	G	L	L	Q	Q	I	D	A	S	L	F	Q	T	Q	A	L	V	L	C	P	T
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence	I	N	P	F	T	G	R	E	.	F	T	P	K	Y	V	D	I	L	K	I	R	R	E	L	P	V	H	A	Q	R	D	E	F	L	K	L	Y	Q	N	N	Q	I	M	V	F	V	G	E	T	G	S	G	K	T	T	Q	I	P	Q	F	V	L	F	D	E	M	P	H	L	E	N	T	Q	V	A	C	T	Q	P	R
Template Known Secondary structure	B		T	T	S	S	S	B	.													T	T	S	G	G	G	G	G												S								T	T	S	S															G	G	G	G	T								S
Template Predicted Secondary structure									.
Template SS confidence
	71	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.

	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence	R	E	L	A	D	Q	V	A	G	E	L	R	R	L	A	R	F	L	P	N	T	K	I	L	T	L	C	G	G	Q	P	F	G	M	Q	R	D	S	L	Q	H	A	P	H	I	I	V	A	T	P	G	R	L	L	D	H	L	Q	K	G	T	V	S	L	D	A	L	N	T	L	V	M	D	E	A	.	D	R	M	L
Query Conservation																																																																												.
Alig confidence																																		.	.	.	.	.	.																								.													.
Template Conservation																																		.	.	.	.	.	.																								.
Template Sequence	R	V	A	A	M	S	V	A	Q	R	V	A	E	E	M	D	V	K	L	G	E	E	V	G	Y	S	I	R	F	E	N	K	T	.	.	.	.	.	.	S	N	K	T	I	L	K	Y	M	T	D	G	M	L	L	R	E	A	M	E	D	H	D	.	L	S	R	Y	S	C	I	I	L	D	E	A	H	E	R	T	L
Template Known Secondary structure															T	T			B	T	T	T						T	T					.	.	.	.	.	.		T	T																			T	T	.		T	T									G	G	G
Template Predicted Secondary structure																																		.	.	.	.	.	.																								.
Template SS confidence
	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.							.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	M	G	F	S	D	A	I	D	D	V	I	R	F	A	P	A	S	R	Q	T	L	L	F	S	A	T	W	P	E	A	I	A	A	I	S	G	R	V	Q	R	D	P	L	A	I	E	I	D	S	T	D	A	L	P	P	I	E	Q	Q	F	Y	E	T	S	S	K	G	K	I	P	L	L	Q	R	L	L	S	L	H
Query Conservation
Alig confidence																													.
Template Conservation																													.
Template Sequence	A	T	D	I	L	M	G	L	L	K	Q	V	V	K	R	R	P	D	L	K	I	I	I	M	S	A	T	L	.	D	A	E	K	F	Q	R	Y	F	N	D	A	P	L	L	A	V	P	G	R	T	Y	P	V	E	L	Y	Y	T	P	E	F	Q	R	D	Y	L	D	S	A	I	R	T	V	L	Q	I	H	A	T	E
Template Known Secondary structure																	T	T								S	S	S	.									T	T	S																			S	S			S																	S
Template Predicted Secondary structure																													.
Template SS confidence
	223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.												.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.						.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Query Sequence	Q	P	S	S	C	V	V	F	C	N	T	K	K	D	C	Q	A	V	C	D	A	L	N	E	V	G	.	.	.	.	.	.	.	.	.	.	.	Q	S	A	L	S	L	H	G	D	L	E	Q	R	D	R	D	Q	T	L	V	R	F	A	N	G	S	A	R	.	.	.	.	.	V	L	V	A	T	D	V	A	A	R
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Template Conservation
Template Sequence	E	A	G	D	I	L	L	F	L	T	G	E	D	E	I	E	D	A	V	R	K	I	S	L	E	G	D	Q	L	V	R	E	E	G	C	G	P	L	S	V	Y	P	L	Y	G	S	L	P	P	H	Q	Q	Q	R	I	F	E	P	A	P	E	S	H	N	G	R	P	G	R	K	V	V	I	S	T	N	I	A	E	T
Template Known Secondary structure		S								S	S																																		T	T							G	G	G	G	S						S	S	S	S										T
Template Predicted Secondary structure
Template SS confidence
	302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

	304	.	.	.	.	.	310	.	.	.	.	.	.	.	.																			.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	G	L	D	I	K	S	L	E	L	V	V	N	F	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	W	D	P	E	V	H	V	H	R	I	G	R	T	A	R	A	G	N	S	G	L	A	I	S	F	C	A	P	E	E
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																																																				.
Template Sequence	S	L	T	I	D	G	I	V	Y	V	V	D	P	G	F	S	K	Q	K	V	Y	N	P	R	I	R	V	E	S	L	L	V	S	P	I	S	K	A	S	A	Q	Q	R	A	G	R	A	G	R	T	R	.	P	G	K	C	F	R	L	Y	T	E	E	A
Template Known Secondary structure	S				T	T																	T	T	T	T																				G	G	G	S	S	S	.	S						S	S
Template Predicted Secondary structure																																																				.
Template SS confidence
	382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.		.	.	.	.	.	.	.	440	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions