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Job DescriptionP21693
Confidence100.00%DateWed Jan 25 15:20:42 GMT 2012
Rank9Aligned Residues366
% Identity25%Templatec3ewsA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:atp-dependent rna helicase ddx19b; PDBTitle: human dead-box rna-helicase ddx19 in complex with adp
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30......... 40.........50.........60.........70........
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Query Sequence  MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILA. . GKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLC
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Template Sequence  VKSFEELR. LKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS
Template Known Secondary structure 
S
SGGG
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TT

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   91....... .100.........110.........120.........130.........140.........150.........160.........
 
   7980.........90.........100.........110.........120.........130.........140.........150........
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Query Sequence  PTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRM
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Template Sequence  PTYELALQTGKVIEQMGKFYPELKLAYAVRGNK. . LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM
Template Known Secondary structure  SSTTT
TT

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S
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S
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   170.........180.........190.........200.. .......210.........220.........230.........240.......
 
   159160.........170.........180.........190.........200...... ...210.........220.........230.....
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Query Sequence  LDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIE. . . IDSTDALPPIEQQFYETSSKGKIPLLQRL
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Template Sequence  IATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNL
Template Known Secondary structure  TTSTTS
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   248.250.........260.........270.........280.........290.........300.........310.........320.......
 
   236...240.........250.........260.........270.........280.........290.........300.........310.....
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Query Sequence  LSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVN
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Template Sequence  YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN
Template Known Secondary structure  S


SSSTT



TTS
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S

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   328.330.........340.........350.........360.........370.........380.........390.........400.......
 
   316...320. ........330.........340........ .350.........360.........370...
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Query Sequence  FELAWD. . . . . . PEVHVHRIGRTARAGNSGLAISFCAPE. EAQRANIISDMLQIKLNWQTPPANS
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Template Sequence  FDLPVDKDGNPDNETYLHRIGRGKR. . . . GLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD
Template Known Secondary structure  SS

B
SSSSB
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   408.410.........420.........430.. .......440.........450.........460........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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