Job Description P21693 Confidence 100.00% Date Wed Jan 25 15:20:42 GMT 2012 Rank 20 Aligned Residues 376 % Identity 18% Template c2zj2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative ski2-type helicase; PDBTitle: archaeal dna helicase hjm apo state in form 1 Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		T	A	F	S	T	L	N	V	L	P	P	A	Q	L	T	N	L	N	E	L	G	Y	L	T	M	T	P	V	Q	A	A	A	L	P	.	A	I	L	A	G	K	D	V	R	V	Q	A	K	T	G	S	G	K	T	A	A	F	G	L	G	L	L	Q	Q	I	D	A	S	L	F	Q	T	Q	A	L	V	L	C	P	T
Query Conservation																																				.
Alig confidence									.																											.																																			.	.
Template Conservation									.																																																														.	.
Template Sequence		M	R	V	D	E	L	R	.	V	D	E	R	I	K	S	T	L	K	E	R	G	I	E	S	F	Y	P	P	Q	A	E	A	L	K	S	G	I	L	E	G	K	N	A	L	I	S	I	P	T	A	S	G	K	T	L	I	A	E	I	A	M	V	H	R	I	L	T	Q	G	.	.	G	K	A	V	Y	I	V	P	L
Template Known Secondary structure			B	G	G	G	S		.	S											T	T			B										T	T	T	G	G	G	T							S		G	G	G	T																		.	.	S							S	S
Template Predicted Secondary structure									.																																																														.	.
Template SS confidence
		1	.	.	.	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	L	A	D	Q	V	A	G	E	L	R	R	L	A	R	F	L	P	N	T	K	I	L	T	L	C	G	G	Q	P	F	G	M	Q	R	D	S	L	Q	H	A	P	H	I	I	V	A	T	P	G	R	L	L	D	H	L	Q	K	G	T	V	S	L	D	A	L	N	T	L	V	M	D	E	A	D	R	M	L	D
Query Conservation
Alig confidence																			.	.																	.	.	.
Template Conservation																			.	.																	.	.	.
Template Sequence		K	A	L	A	E	E	K	F	Q	E	F	Q	D	W	E	K	I	.	.	G	L	R	V	A	M	A	T	G	D	Y	D	S	K	D	E	.	.	.	W	L	G	K	Y	D	I	I	I	A	T	A	E	K	F	D	S	L	L	R	H	G	S	S	W	I	K	D	V	K	I	L	V	A	D	E	I	H	L	I	G	S
Template Known Secondary structure		T	T	S								T	G	G	G	G	G	G	.	.	T								S			S				G	.	.	.	G	G	G	G		S																T		G	G	G	G	G								T	G	G	G	G	G
Template Predicted Secondary structure																			.	.																	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110				.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.					.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.
Query SS confidence																																																																					.	.	.	.
Query Sequence		M	G	F	S	D	A	I	D	D	V	I	R	F	A	P	A	S	R	Q	T	L	L	F	S	A	T	W	P	E	A	I	A	A	I	S	G	R	V	Q	R	D	P	L	A	I	E	I	D	S	T	D	A	L	P	P	I	E	Q	Q	F	Y	E	T	S	S	K	G	.	.	.	.	K	I	P	L	L	Q	R	L	L
Query Conservation																																																																					.	.	.	.
Alig confidence																																																																					.	.	.	.
Template Conservation
Template Sequence		R	D	R	G	A	T	L	E	V	I	L	A	H	M	L	G	K	A	Q	I	I	G	L	S	A	T	I	G	N	P	E	E	L	A	E	W	L	N	A	E	L	I	V	S	D	W	R	P	V	K	L	R	R	G	V	F	Y	Q	G	F	V	T	W	E	D	G	S	I	D	R	F	S	S	W	E	E	L	V	Y	D
Template Known Secondary structure		T	T	T												B	T	T	B										S									T	T										S	S									T	T					T	T	S						S	S	T
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.																																		270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	H	Q	P	S	S	C	V	V	F	C	N	T	K	K	D	C	Q	A	V	C	D	A	L	N	E	V	G	Q	S	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	H	G	D	L	E	Q	R	D	R	D	Q	T
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	R	K	K	K	G	A	L	I	F	V	N	M	R	R	K	A	E	R	V	A	L	E	L	S	K	K	V	K	S	L	L	T	K	P	E	I	R	A	L	N	E	L	A	D	S	L	E	E	N	P	T	N	E	K	L	A	K	A	I	R	G	G	V	A	F	H	H	A	G	L	G	R	D	E	R	V	L	V
Template Known Secondary structure					T	T								S	S																G	G	G																S			S												T	T						T	T	S
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.					.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.																						.	.
Query SS confidence																																			.	.	.	.																						.	.
Query Sequence		L	V	R	F	A	N	G	S	A	R	V	L	V	A	T	D	V	A	A	R	G	L	D	I	K	S	L	E	L	V	V	N	F	.	.	.	.	E	L	A	W	D	P	E	V	H	V	H	R	I	G	R	T	A	R	A	G	N	.	.	S	G	L	A	I	S	F	C	A	P	E	E	A	Q	R	A	N	I	I	S
Query Conservation																																			.	.	.	.																						.	.
Alig confidence																																			.	.	.	.																						.	.
Template Conservation
Template Sequence		E	E	N	F	R	K	G	I	I	K	A	V	V	A	T	P	T	L	S	T	P	A	F	R	V	I	I	R	D	I	W	R	Y	S	D	F	G	M	E	R	I	P	I	I	E	V	H	Q	M	L	G	R	A	G	R	P	K	Y	D	E	V	G	E	G	I	I	V	S	T	S	D	D	P	R	E	V	M	N	H	Y
Template Known Secondary structure							T	T	S	S							S	T	T				B	S							S					T	T															T	T	B			T	T	T		S									S	S	S
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	L	Q	I	K	L	N	W	Q	T	P	P	A	N	S	S	I	A	T	L	E	A	E	M	A	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	F	G	K	P	E	K	L	F	S	Q	L	S	N	E	S	N	L	R	S	Q	V	L	A	L	I	A	T
Template Known Secondary structure		T	S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions