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Job DescriptionP21693
Confidence99.95%DateWed Jan 25 15:20:42 GMT 2012
Rank51Aligned Residues269
% Identity17%Templatec2qeqA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:flavivirin protease ns3 catalytic subunit; PDBTitle: crystal structure of kunjin virus ns3 helicase
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   41........50.........60.........70.........80.........90.........100.........110.........120
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Query Sequence  KDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ
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Template Sequence  QITVLDLHPGAGKTRRILPQIIKEAINRRL. . RTAVLAPTRVVAAEMAEALRGLPIRYQTSAN. . . . . . . . . . . . . . . . .
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SSTTTTTTTT
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   188.190.........200.........210....... ..220.........230.........240........
 
   121........130.........140.........150.........160.........170.........180.........190.........200
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Query Sequence  HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQR
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Template Sequence  GNEIVDVMCHATLTHRLMSPH. RVPNYNLFVMDEAHFTDPASIAARGYISTRVELGEAAAIFMTATP. . . . . . . . . . . . .
Template Known Secondary structure 
S

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   254.....260.........270.... .....280.........290.........300.........310.........
 
   201........210.........220.........230.........240.........250.........260.........270........
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Query Sequence  DPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQR. .
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Template Sequence  . . PGTSDPFPESNAPISDLQTEIPDRAWNSGYEWITEY. . IGKTVWFVPSVKMGNEIALCLQRAGKKVIQLNRNDDWDFV
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   320.........330.........340.........350..... ....360.........370.........380.........390.....
 
   279280.........290.........300.........310.........320.........330.........340......
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Query Sequence  . . DRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCA
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Template Sequence  VTTDISEMGANFKASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRTGRNPSQAGDEYCYG
Template Known Secondary structure  S
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   407..410.........420.........430.........440.........450.........460.........470......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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