Job Description P21693 Confidence 100.00% Date Wed Jan 25 15:20:42 GMT 2012 Rank 4 Aligned Residues 373 % Identity 32% Template c2hxyC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:probable atp-dependent rna helicase ddx48; PDBTitle: crystal structure of human apo-eif4aiii Resolution 3.30 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	S	T	L	N	V	L	P	P	A	Q	L	T	N	L	N	E	L	G	Y	L	T	M	T	P	V	Q	A	A	A	L	P	A	I	L	A	G	K	D	V	R	V	Q	A	K	T	G	S	G	K	T	A	A	F	G	L	G	L	L	Q	Q	I	D	A	S	L	F	Q	T	Q	A	L	V	L	C	P	T	R	E
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		T	F	D	T	M	G	.	L	R	E	D	L	L	R	G	I	Y	A	Y	G	F	E	K	P	S	A	I	Q	Q	R	A	I	K	Q	I	I	K	G	R	D	V	I	A	Q	S	Q	S	G	T	G	K	T	A	T	F	S	I	S	V	L	Q	C	L	D	I	Q	V	R	E	T	Q	A	L	I	L	A	P	T	R	E
Template Known Secondary structure			S	G	G	G	T	.													T			S															T									S	S	S		T	T										S			T	T	S		S								S
Template Predicted Secondary structure								.
Template SS confidence
		39	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	D	Q	V	A	G	E	L	R	R	L	A	R	F	L	P	N	T	K	I	L	T	L	C	G	G	Q	P	F	G	M	Q	R	D	S	L	Q	H	A	P	H	I	I	V	A	T	P	G	R	L	L	D	H	L	Q	K	G	T	V	S	L	D	A	L	N	T	L	V	M	D	E	A	D	R	M	L	D	M	G
Query Conservation
Alig confidence																		.
Template Conservation																		.
Template Sequence		L	A	V	Q	I	Q	K	G	L	L	A	L	G	D	Y	M	.	N	V	Q	C	H	A	C	I	G	G	T	N	V	G	E	D	I	R	K	L	D	Y	G	Q	H	V	V	A	G	T	P	G	R	V	F	D	M	I	R	R	R	S	L	R	T	R	A	I	K	M	L	V	L	D	E	A	D	E	M	L	N	K	G
Template Known Secondary structure														S	G	G	G	.										S	S	S													S															T	T		S			T	T							T	T							T	T
Template Predicted Secondary structure																		.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		F	S	D	A	I	D	D	V	I	R	F	A	P	A	S	R	Q	T	L	L	F	S	A	T	W	P	E	A	I	A	A	I	S	G	R	V	Q	R	D	P	L	A	.	.	I	E	I	D	S	T	D	A	L	P	P	I	E	Q	Q	F	Y	E	T	S	S	K	G	K	I	P	L	L	Q	R	L	L	S	L	H	Q
Query Conservation																																												.	.
Alig confidence																																												.	.
Template Conservation
Template Sequence		F	K	E	Q	I	Y	D	V	Y	R	Y	L	P	P	A	T	Q	V	V	L	I	S	A	T	L	P	H	E	I	L	E	M	T	N	K	F	M	T	D	P	I	R	I	L	V	K	R	D	E	L	T	L	E	G	I	K	Q	F	F	V	A	V	E	R	E	E	W	K	F	D	T	L	C	D	L	Y	D	T	L	T
Template Known Secondary structure											T	T	S		S	S								S				T	T						T	T	S		S	S						S	S					B		T	T										S	T											T
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	S	C	V	V	F	C	N	T	K	K	D	C	Q	A	V	C	D	A	L	N	E	V	G	Q	S	A	L	S	L	H	G	D	L	E	Q	R	D	R	D	Q	T	L	V	R	F	A	N	G	S	A	R	V	L	V	A	T	D	V	A	A	R	G	L	D	I	K	S	L	E	L	V	V	N	F	E	L	A	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	Q	A	V	I	F	C	N	T	K	R	K	V	D	W	L	T	E	K	M	R	E	A	N	F	T	V	S	S	M	H	G	D	M	P	Q	K	E	R	E	S	I	M	K	E	F	R	S	G	A	S	R	V	L	I	S	T	D	V	W	A	R	G	L	D	V	P	Q	V	S	L	I	I	N	Y	D	L	P	N
Template Known Secondary structure		T	S							S														T	T									T	T	S															T	S		S						S			S	S	S	S		S				S					S	S			S
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	E	V	H	V	H	R	I	G	R	T	A	R	A	G	N	S	G	L	A	I	S	F	C	A	P	E	E	A	Q	R	A	N	I	I	S	D	M	L	Q	I	K	L	N	W	Q	T	P	P	A	N	S	S	I	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	R	E	L	Y	I	H	R	I	G	R	S	G	R	Y	G	R	K	G	V	A	I	N	F	V	K	N	D	D	I	R	I	L	R	D	I	E	Q	Y	Y	S	T	Q	I	D	E	M	P	M	N	V	A	D	L	I	L	E
Template Known Secondary structure		S	T	T	T							B		S	S	S												G	G	G												T								S		G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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