Job Description P21693 Confidence 100.00% Date Wed Jan 25 15:20:42 GMT 2012 Rank 2 Aligned Residues 359 % Identity 36% Template c2db3D_ PDB info PDB header:hydrolase/rna Chain: D: PDB Molecule:atp-dependent rna helicase vasa; PDBTitle: structural basis for rna unwinding by the dead-box protein2 drosophila vasa Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.
Query Sequence		M	T	A	F	S	T	L	N	V	L	P	P	A	Q	L	T	N	L	N	E	L	G	Y	L	T	M	T	P	V	Q	A	A	A	L	P	A	I	L	A	G	K	D	V	R	V	Q	A	K	T	G	S	G	K	T	A	A	F	G	L	G	L	L	Q	Q	I	D	A	S	.	.	.	.	.	L	F	Q	T	Q	A	L
Query Conservation																																																																						.	.	.	.	.
Alig confidence										.																																																												.	.	.	.	.
Template Conservation										.
Template Sequence		I	Q	H	F	T	S	A	D	.	L	R	D	I	I	I	D	N	V	N	K	S	G	Y	K	I	P	T	P	I	Q	K	C	S	I	P	V	I	S	S	G	R	D	L	M	A	C	A	Q	T	G	S	G	K	T	A	A	F	L	L	P	I	L	S	K	L	L	E	D	P	H	E	L	E	L	G	R	P	Q	V	V
Template Known Secondary structure			S	S	T	T	S	S		.												T	T			S														T	T									T	T	S																	S					B	T	T	B		S
Template Predicted Secondary structure										.
Template SS confidence
		244	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	C	P	T	R	E	L	A	D	Q	V	A	G	E	L	R	R	L	A	R	F	L	P	N	T	K	I	L	T	L	C	G	G	Q	P	F	G	M	Q	R	D	S	L	Q	H	A	P	H	I	I	V	A	T	P	G	R	L	L	D	H	L	Q	K	G	T	V	S	L	D	A	L	N	T	L	V	M	D	E	A
Query Conservation
Alig confidence																									.
Template Conservation																									.
Template Sequence		I	V	S	P	T	R	E	L	A	I	Q	I	F	N	E	A	R	K	F	A	F	E	S	.	Y	L	K	I	G	I	V	Y	G	G	T	S	F	R	H	Q	N	E	C	I	T	R	G	C	H	V	V	I	A	T	P	G	R	L	L	D	F	V	D	R	T	F	I	T	F	E	D	T	R	F	V	V	L	D	E	A
Template Known Secondary structure					S	S															T	T	T	S	.	S								S	S	S											T			S																T	S	S			T	T								T
Template Predicted Secondary structure																									.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		D	R	M	L	D	M	G	F	S	D	A	I	D	D	V	I	.	.	R	F	A	P	A	S	R	Q	T	L	L	F	S	A	T	W	P	E	A	I	A	A	I	S	G	R	V	Q	R	D	P	L	A	I	E	I	D	S	T	D	A	L	P	P	I	E	Q	Q	F	Y	E	T	S	S	K	G	K	I	P	L	L	Q
Query Conservation																		.	.
Alig confidence																		.	.
Template Conservation
Template Sequence		D	R	M	L	D	M	G	F	S	E	D	M	R	R	I	M	T	H	V	T	M	R	P	E	H	Q	T	L	M	F	S	A	T	F	P	E	E	I	Q	R	M	A	G	E	F	L	K	N	Y	V	F	V	A	I	G	I	V	G	G	A	C	S	D	V	K	Q	T	I	Y	E	V	N	K	Y	A	K	R	S	K	L
Template Known Secondary structure					T	S												T		T	T	S		S	S								S											G	G	G		S	S							S	S	T	T				T	T										G	G	G
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	L	S	L	H	Q	P	S	S	C	V	V	F	C	N	T	K	K	D	C	Q	A	V	C	D	A	L	N	E	V	G	Q	S	A	L	S	L	H	G	D	L	E	Q	R	D	R	D	Q	T	L	V	R	F	A	N	G	S	A	R	V	L	V	A	T	D	V	A	A	R	G	L	D	I	K	S	L	E	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E	I	L	S	E	Q	A	D	G	T	I	V	F	V	E	T	K	R	G	A	D	F	L	A	S	F	L	S	E	K	E	F	P	T	T	S	I	H	G	D	R	L	Q	S	Q	R	E	Q	A	L	R	D	F	K	N	G	S	M	K	V	L	I	A	T	S	V	A	S	R	G	L	D	I	K	N	I	K	H	V
Template Known Secondary structure										T	T						S														T	T	T								T	T	S														T	T	S								G	G	G	S	S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		V	N	F	E	L	A	W	D	P	E	V	H	V	H	R	I	G	R	T	A	R	A	G	N	S	G	L	A	I	S	F	C	A	.	P	E	E	A	Q	R	A	N	I	I	S	D	M	L	Q
Query Conservation																																			.
Alig confidence																																			.
Template Conservation
Template Sequence		I	N	Y	D	M	P	S	K	I	D	D	Y	V	H	R	I	G	R	T	G	R	V	G	N	N	G	R	A	T	S	F	F	D	P	E	K	D	R	A	I	A	A	D	L	V	K	I	L	E
Template Known Secondary structure				S	S			S	S									T	T	S	S		T	T											T	T	T
Template Predicted Secondary structure
Template SS confidence
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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