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Job DescriptionP21693
Confidence99.89%DateWed Jan 25 15:20:42 GMT 2012
Rank73Aligned Residues331
% Identity14%Templatec1z3iX_
PDB info PDB header:recombination/dna bindingChain: X: PDB Molecule:similar to rad54-like; PDBTitle: structure of the swi2/snf2 chromatin remodeling domain of eukaryotic2 rad54
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30....... ..40.........50.........60.........70. ........80.........90.
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Query Sequence  TMTPVQAAALPAI. . . . . . . . . LAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQ. . . . TQALVLCPTRELADQVAGEL
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Template Sequence  VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSP. SSLVRNWYNEV
Template Known Secondary structure  T

TTSSSTT




TTS


TTSS
S
S

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   146...150.........160.........170.........180.........190.........200.........210... ......220....
 
   92.......100.........110........ .120.........130.........140.........150.........160.......
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Query Sequence  RRLARFLPNTKILTLCGGQPFGMQRDS. . . . LQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAI
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Template Sequence  GKWLGG. . RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQT
Template Known Secondary structure  GG..G


SS



SS

S

TTTTTTS


TTGGG

TT
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   225....230 .........240.........250.........260.........270.........280.........290.........300..
 
   168.170.........180.........190.......
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Query Sequence  DDVIRFAPASRQTLLFSATWPEAIAAISGR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  YLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIV
Template Known Secondary structure 

S
SS
SGGGGGG


TSTT

S
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   303......310.........320.........330.........340.........350.........360.........370.........380..
 
   198.200.........210.........220.........
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Query Sequence  . . VQRDPLAIEIDSTDALPPIEQQFYETSSKGKI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  NRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCL
Template Known Secondary structure 


GGGGGGTS





GGGSS
TT



T
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   383......390.........400.........410.........420.........430.........440.........450.........460..
 
   230.........240.........250.........260.........270......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLE
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Template Sequence  TGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMS
Template Known Secondary structure  T
TT
TTGGGTS
SS

SSS

GGGS


S
T


SS

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   463......470.........480.........490.........500.........510.........520.........530.........540..
 
   277..280.........290... ......300.........310.........320.........330....... ..340........ .
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Query Sequence  QRDRDQTLVRFANGSAR. . . VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGN. . SGLAISFCAPE. . E
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Template Sequence  IKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIE
Template Known Secondary structure  STT



GGGS
TT


TT
S

SSTTSSSTT

S
TTS
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   543......550.........560.........570.........580.........590.........600.........610.........620..
 
   350........
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Query Sequence  AQRANIISD
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Template Conservation 
 
      
Template Sequence  EKILQRQAH
Template Known Secondary structure 
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   623......630.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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