Job Description P21693 Confidence 99.97% Date Wed Jan 25 15:20:42 GMT 2012 Rank 39 Aligned Residues 280 % Identity 17% Template c1ymfA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:genome polyprotein [contains: flavivirin PDBTitle: crystal structure of yellow fever virus ns3 helicase2 complexed with adp Resolution 2.60 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	L	A	G	K	D	V	R	V	Q	A	K	T	G	S	G	K	T	A	A	F	G	L	G	L	L	Q	Q	I	D	A	S	L	F	Q	T	Q	A	L	V	L	C	P	T	R	E	L	A	D	Q	V	A	G	E	L	R	R	L	A	R	F	L	P	N	T	K	I	L	T	L	C	G	G	Q	P	F	G	M	Q
Query Conservation
Alig confidence																																					.	.																																									.	.	.
Template Conservation																																					.	.																																									.	.	.
Template Sequence		X	L	K	K	G	X	T	T	V	L	D	F	H	P	G	A	G	K	T	R	R	F	L	P	Q	I	L	A	E	C	A	R	R	R	L	.	.	R	T	L	V	L	A	P	T	R	V	V	L	S	E	X	K	E	A	F	H	G	L	D	V	K	F	H	T	Q	A	F	S	A	H	G	S	G	R	E	V	.	.	.
Template Known Secondary structure		T	T	S	T	T									T	T	S		T	T	T	T													T		.	.							S	S												T	T	S						S	S								S	S			.	.	.
Template Predicted Secondary structure																																					.	.																																									.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	S	L	Q	H	A	P	H	I	I	V	A	T	P	G	R	L	L	D	H	L	Q	K	G	T	V	S	L	D	A	L	N	T	L	V	M	D	E	A	D	R	M	L	D	M	G	F	S	D	A	I	D	D	V	I	R	F	A	P	A	S	R	Q	T	L	L	F	S	A	T	W	P	E	A	I	A	A	I	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																																		.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																																																																		.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	I	D	A	X	C	H	A	T	L	T	Y	R	X	L	E	P	T	R	V	V	N	W	E	V	I	I	X	D	E	A	H	F	L	D	P	A	S	I	A	A	R	G	W	A	A	H	R	A	R	A	N	E	S	A	T	I	L	X	T	A	T	P	P	G	T	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.															S	S							S					T	T	T	T			S																T	T	S								S	S		T	T		.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																																		.	.	.	.	.
Template SS confidence
												262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	V	Q	R	D	P	L	A	I	E	I	D	S	T	D	A	L	P	P	I	E	Q	Q	F	Y	E	T	S	S	K	G	K	I	P	L	L	Q	R	L	L	S	L	H	Q	P	S	S	C	V	V	F	C	N	T	K	K	D	C	Q	A	V	C	D	A	L	N	E	V	G	Q	S	A	L	S	L	H	G	D	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																																			.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																																			.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	S	D	E	F	P	H	S	N	G	E	I	E	D	V	Q	T	D	I	P	S	E	P	W	N	T	G	H	D	W	I	L	A	D	K	.	.	R	P	T	A	W	F	L	P	S	I	R	A	A	N	V	X	A	A	S	L	R	K	A	G	K	S	V	V	V	L	N	R	K	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.			S	S				S	S											S	S			S	S	S		T							.	.	S							S															T	T								S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																			.	.
Template SS confidence
												327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360			.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.						.	.	.	.	310	.	.	.	.	.	.	.	.		.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.														.
Query SS confidence																																.	.	.	.	.														.
Query Sequence		E	Q	R	D	R	D	Q	T	L	V	R	F	A	N	G	S	A	R	V	L	V	A	T	D	V	A	A	R	G	L	.	.	.	.	.	D	I	K	S	L	E	L	V	V	N	F	E	L	.	A	W	D	P	E	V	H	V	H	R	I	G	R	T	A	R	A	G	N	S	G	L	A	I	S	F	C	A	P
Query Conservation																																.	.	.	.	.														.
Alig confidence																																.	.	.	.	.														.
Template Conservation
Template Sequence		F	E	K	K	P	D	F	I	L	A	T	D	I	A	E	X	G	A	N	L	C	V	E	R	V	L	D	C	R	T	A	F	K	P	V	L	V	D	E	G	R	K	V	A	I	K	G	P	L	R	I	S	A	S	S	A	A	Q	R	R	G	R	I	G	R	N	P	N	R	D	G	D	S	Y	Y	Y	S	E
Template Known Secondary structure							S					S	S	G	G	G			T	T				S															T	T	T	T																				T	T	S	S			T	T										S
Template Predicted Secondary structure
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions