Job Description P21693 Confidence 100.00% Date Wed Jan 25 15:20:42 GMT 2012 Rank 3 Aligned Residues 362 % Identity 27% Template c1xtkA_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:probable atp-dependent rna helicase p47; PDBTitle: structure of decd to dead mutation of human uap56 Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	T	L	N	V	L	P	P	A	Q	L	T	N	L	N	E	L	G	Y	L	T	M	T	P	V	Q	A	A	A	L	P	A	I	L	A	G	K	D	V	R	V	Q	A	K	T	G	S	G	K	T	A	A	F	G	L	G	L	L	Q	Q	I	D	A	S	L	F	Q	T	Q	A	L	V	L	C	P	T	R	E	L
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		F	R	D	F	L	.	L	K	P	E	L	L	R	A	I	V	D	C	G	F	E	H	P	S	E	V	Q	H	E	C	I	P	Q	A	I	L	G	M	D	V	L	C	Q	A	K	S	G	M	G	K	T	A	V	F	V	L	A	T	L	Q	Q	L	E	P	V	T	G	Q	V	S	V	L	V	M	C	H	T	R	E	L
Template Known Secondary structure		G	G	G	G		.												T	T																	T	T									S	S	T	T																	T	T									S
Template Predicted Secondary structure							.
Template SS confidence
		47	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		A	D	Q	V	A	G	E	L	R	R	L	A	R	F	L	P	N	T	K	I	L	T	L	C	G	G	Q	P	F	G	M	.	Q	R	D	S	L	Q	H	A	P	H	I	I	V	A	T	P	G	R	L	L	D	H	L	Q	K	G	T	V	S	L	D	A	L	N	T	L	V	M	D	E	A	D	R	M	L	D	M	G
Query Conservation																																	.
Alig confidence																																	.
Template Conservation
Template Sequence		A	F	Q	I	S	K	E	Y	E	R	F	S	K	Y	M	P	N	V	K	V	A	V	F	F	G	G	L	S	I	K	K	D	E	E	V	L	K	K	N	C	P	H	I	V	V	G	T	P	G	R	I	L	A	L	A	R	N	K	S	L	N	L	K	H	I	K	H	F	I	L	D	E	A	D	K	M	L	E	Q	L
Template Known Secondary structure													T	T	T		T	T								T	T	S												S			S															T	T	S	S			T	T								S						S	S
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.				.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.
Query SS confidence																																																						.	.	.
Query Sequence		F	S	D	A	I	D	D	V	I	R	F	A	P	A	S	R	Q	T	L	L	F	S	A	T	W	P	E	A	I	A	A	I	S	G	R	V	Q	R	D	P	L	A	I	E	I	D	S	T	D	A	L	P	.	.	.	P	I	E	Q	Q	F	Y	E	T	S	S	K	G	K	I	P	L	L	Q	R	L	L	S	L	H
Query Conservation																																																						.	.	.
Alig confidence																																																						.	.	.
Template Conservation
Template Sequence		D	M	R	R	D	V	Q	E	I	F	R	M	T	P	H	E	K	Q	V	M	M	F	S	A	T	L	S	K	E	I	R	P	V	C	R	K	F	M	Q	D	P	M	E	I	F	V	D	D	E	T	K	L	T	L	H	G	L	Q	Q	Y	Y	V	K	L	K	D	N	E	K	N	R	K	L	F	D	L	L	D	V	L
Template Known Secondary structure													T	S		S	S	S							S	S			T	T										S	S															T	T																								S
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	S	S	C	V	V	F	C	N	T	K	K	D	C	Q	A	V	C	D	A	L	N	E	V	G	Q	S	A	L	S	L	H	G	D	L	E	Q	R	D	R	D	Q	T	L	V	R	F	A	N	G	S	A	R	V	L	V	A	T	D	V	A	A	R	G	L	D	I	K	S	L	E	L	V	V	N	F	E	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	F	N	Q	V	V	I	F	V	K	S	V	Q	R	C	I	A	L	A	Q	L	L	V	E	Q	N	F	P	A	I	A	I	H	R	G	M	P	Q	E	E	R	L	S	R	Y	Q	Q	F	K	D	F	Q	R	R	I	L	V	A	T	N	L	F	G	R	G	M	D	I	E	R	V	N	I	A	F	N	Y	D	M	P
Template Known Secondary structure				S							S	S														T	T								S	S	S												T	T			S	S						S				T	T		B			T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		W	D	P	E	V	H	V	H	R	I	G	R	T	A	R	A	G	N	S	G	L	A	I	S	F	C	.	A	P	E	E	A	Q	R	A	N	I	I	S	D	M	L	Q	I	K	L	N	W
Query Conservation																												.
Alig confidence																												.
Template Conservation
Template Sequence		E	D	S	D	T	Y	L	H	R	V	A	R	A	G	R	F	G	T	K	G	L	A	I	T	F	V	S	D	E	N	D	A	K	I	L	N	D	V	Q	D	R	F	E	V	N	I	S	E
Template Known Secondary structure		S	S	T	T						S		B		S	S	S												S	T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions