Phyre 2 alignment of P21693 with c1cu1B

Job Description P21693
Confidence 99.82% Date Wed Jan 25 15:20:42 GMT 2012

Rank 85 Aligned Residues 263

% Identity 21% Template c1cu1B_

PDB info PDB header:hydrolase Chain: B: PDB Molecule:protein (protease/helicase ns3); PDBTitle: crystal structure of an enzyme complex from hepatitis c2 virus

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	G	K	D	V	R	V	Q	A	K	T	G	S	G	K	T	A	A	F	G	L	G	L	L	Q	Q	I	D	A	S	L	F	Q	T	Q	A	L	V	L	C	P	T	R	E	L	A	D	Q	V	A	G	E	L	R	R	L	A	R	F	L	P	N	T	K	I	L	T	L	C	G	G	Q	P	F	G	M	Q	R	D	S
Query Conservation
Alig confidence																											.	.	.	.	.	.																																										.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.																																										.	.	.	.	.	.	.
Template Sequence	S	F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	T	K	V	P	A	A	Y	A	A	Q	.	.	.	.	.	.	G	Y	K	V	L	V	L	N	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	G	I	D	P	N	I	R	T	G	V	R	T	I	T	T	G	.	.	.	.	.	.	.
Template Known Secondary structure	S										T	T	S		T	T	T									T	.	.	.	.	.	.	T								S																									S	S							.	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.																																										.	.	.	.	.	.	.
Template SS confidence
	1196	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.							.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.

	119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence	L	Q	H	A	P	H	I	I	V	A	T	P	G	R	L	L	D	H	L	Q	K	G	T	V	S	L	D	A	L	N	T	L	V	M	D	E	A	D	R	M	L	D	M	G	F	S	.	D	A	I	D	D	V	I	R	F	A	P	A	S	R	Q	T	L	L	F	S	A	T	W	P	E	A	I	A	A	I	S	G	R
Query Conservation																																															.
Alig confidence	.	.	.	.															.	.	.																										.
Template Conservation	.	.	.	.															.	.	.
Template Sequence	.	.	.	.	A	P	V	T	Y	S	T	Y	G	K	F	L	A	D	.	.	.	G	G	C	S	G	G	A	Y	D	I	I	I	C	D	E	C	H	S	T	D	S	T	T	I	L	G	I	G	T	V	L	D	Q	A	E	T	A	G	A	R	L	V	V	L	A	T	A	T	P	P	G	S	V	T	V	P	H	P	N
Template Known Secondary structure	.	.	.	.		S												T	.	.	.	T	S			T	T	S		S					T	T	T	T			S														T	T	T	T	T		S							S	S		T	T							T	T
Template Predicted Secondary structure	.	.	.	.															.	.	.
Template SS confidence
					1263	.	.	.	.	.	.	1270	.	.	.	.	.	.				.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.

	198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	Q	R	D	P	L	A	I	E	I	D	S	T	D	A	L	P	P	I	E	Q	Q	F	Y	E	T	S	S	K	G	K	I	P	L	L	Q	R	L	L	S	L	H	Q	P	S	S	C	V	V	F	C	N	T	K	K	D	C	Q	A	V	C	D	A	L	N	E	V	G	Q	S	A	L	S	L	H	G	D	L	E	Q
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	I	E	E	V	A	L	S	N	T	G	E	I	P	F	Y	G	K	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	E	A	I	R	G	G	R	H	L	I	F	C	H	S	K	K	K	C	D	E	L	A	A	K	L	S	G	L	G	I	N	A	V	A	Y	Y	R	G	L	D	V
Template Known Secondary structure								S		S	S				T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	T	S	S	S							S	S														T	T								T	T	S		G
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1336	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.																			.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.

	278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.																						.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	R	D	R	D	Q	T	L	V	R	F	A	N	G	S	A	R	V	L	V	A	T	D	V	A	A	R	G	L	D	I	K	S	L	E	L	V	V	N	F	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	W	D	P	E	V	H	V	H	R	I	G	R	T	A	R	A	G
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.																					.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation				.	.	.	.	.	.	.																					.																																																	.
Template Sequence	S	V	I	.	.	.	.	.	.	.	P	T	I	G	D	V	V	V	V	A	T	D	A	L	M	T	G	Y	T	G	.	D	F	D	S	V	I	D	C	N	T	C	V	T	Q	T	V	D	F	S	L	D	P	T	F	T	I	E	T	T	T	V	P	Q	D	A	V	S	R	S	Q	R	R	G	R	T	G	R	G	.
Template Known Secondary structure	G	G	S	.	.	.	.	.	.	.		S	S	S	S							T	T								.			S																		S	S	S											B									T	T	S		S	S	.
Template Predicted Secondary structure				.	.	.	.	.	.	.																					.																																																	.
Template SS confidence
	1398	.	1400								.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420		.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.

	337	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	S	G	L	A	I	S	F	C	A	P	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence	R	R	G	I	Y	R	F	V	T	P	G	E
Template Known Secondary structure	S							S
Template Predicted Secondary structure
Template SS confidence
	1469	1470	.	.	.	.	.	.	.	.	.	1480

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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