Job Description P0ACK2 Confidence 96.19% Date Thu Jan 5 11:18:20 GMT 2012 Rank 177 Aligned Residues 143 % Identity 14% Template c3kv1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional repressor; PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri Resolution 1.70 Å

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		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.					.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		N	T	A	M	K	R	S	V	A	K	A	A	V	E	L	.	.	.	.	I	Q	P	G	H	R	V	I	L	D	S	G	T	T	T	F	E	I	A	R	L	M	R	K	H	T	D	V	I	A	M	T	N	G	M	N	V	A	N	A	L	L	E	A	E	G	V	E	L	L	M	T	G	G	H	L	R	R	Q	S	Q
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		T	N	E	Q	R	K	Q	V	A	A	L	V	S	S	Y	L	N	N	N	L	Q	E	G	X	A	V	A	V	G	Q	G	Q	N	V	A	A	V	A	D	H	A	G	I	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	N	A	R	F	V	S	A	I	G	G	T	H	I	I	N	.
Template Known Secondary structure																							T	T								S															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	B		B						.
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.																		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	Y	G	D	Q	A	E	Q	S	L	Q	N	Y	H	F	D	M	L	F	L	G	V	D	A	I	D	L	E	R	G	V	S	T	H	N	E	D	E	A	R	L	N	R	R	M	C	E	V	A	E	R	I	I	V	V	T	D	S	S	K	F	N	R	S	S	L	H	K	I	I	D	T	Q	R	I	D	M	I	I
Query Conservation
Alig confidence		.	.																																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	A	D	H	I	C	R	R	L	A	K	K	Y	G	G	S	S	E	T	L	Y	A	P	A	Y	V	N	D	P	S	L	R	S	A	F	X	E	H	A	T	I	K	E	T	L	S	Q	A	R	K	A	E	F	A	L	.	.	.	.	.	.	.	.	.	.	.	V	G	I	G	D	X	D	E	N	S	H	X	V
Template Known Secondary structure		.	.													T								S	B	S	B		S	S									T	S												T		S				.	.	.	.	.	.	.	.	.	.	.										T
Template Predicted Secondary structure		.	.																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150												.	.	.	.	.	.	.	.	.	160	.	.	.
		245	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		V	D	E	G	I	P	A	D	S	L	.	E	G	L	R	K	A	G	V
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		K	L	G	F	F	T	P	K	E	F	V	E	A	R	L	N	D	G	I
Template Known Secondary structure			T	T	S	S											T	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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