Job Description P27306 Confidence 99.93% Date Thu Jan 5 11:43:55 GMT 2012 Rank 98 Aligned Residues 323 % Identity 16% Template c3s5wB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:l-ornithine 5-monooxygenase; PDBTitle: ornithine hydroxylase (pvda) from pseudomonas aeruginosa Resolution 1.90 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.						.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.									.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																					.	.	.	.	.																		.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.																		.	.	.	.	.	.	.	.
Query Sequence		Y	D	A	I	V	I	G	S	G	P	G	G	E	G	A	A	M	G	L	.	.	.	.	.	V	K	Q	G	A	R	V	A	V	I	E	R	Y	Q	N	V	G	.	.	.	.	.	.	.	.	G	G	C	T	H	W	G	T	I	P	S	K	A	L	R	H	A	V	S	R	I	I	E	F	N	Q	N	P	L	Y	S
Query Conservation																					.	.	.	.	.																		.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	D	L	I	G	V	G	F	G	P	S	N	I	A	L	A	I	A	L	Q	E	R	A	Q	A	Q	G	A	L	E	V	L	F	L	D	K	Q	G	D	Y	R	W	H	G	N	T	L	V	S	Q	S	E	L	Q	I	S	F	L	K	D	L	V	S	L	R	N	P	T	S	P	Y	S	F	V	N	Y	L	H	K	H
Template Known Secondary structure			S							S																											S		S	S			S	S	G	G	G			S	S		B		S	S		G	G	G	S	S	S	T	T	T		T	T	S	T	T	S								T
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		74	.							.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.
Query Sequence		D	H	.	.	.	.	.	.	S	R	L	L	R	S	S	F	A	D	I	L	N	H	A	D	N	V	I	N	Q	Q	T	R	M	R	Q	G	F	Y	E	R	N	H	C	E	I	L	Q	G	N	A	R	F	V	D	E	H	T	L	A	L	D	C	P	D	G	S	V	E	T	L	T	A	E	K	F	V	I	A	C	G
Query Conservation				.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.																																												.
Template Conservation																																																					.
Template Sequence		D	R	L	V	D	F	I	N	L	G	T	F	Y	P	C	R	M	E	F	N	D	Y	L	R	W	V	A	S	H	F	Q	E	Q	S	R	Y	G	E	E	V	L	R	I	E	P	M	L	S	A	G	Q	.	V	E	A	L	R	V	I	S	R	N	A	D	G	E	E	L	V	R	T	T	R	A	L	V	V	S	P	G
Template Known Secondary structure		T									T		S			B													G	G	G	T	T	T				S												T	T		.											T	T	S								S
Template Predicted Secondary structure																																																					.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.			.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure														.	.																																								.	.
Query SS confidence														.	.																																								.	.
Query Sequence		S	R	P	Y	H	P	T	D	V	D	F	T	.	.	H	P	R	I	Y	D	S	D	S	I	L	S	M	H	H	E	P	R	H	V	L	I	Y	G	A	G	V	I	G	C	E	Y	A	S	I	F	R	G	M	.	.	D	V	K	V	D	L	I	N	T	R	D	R	L	L	A	F	L	D	Q	E	M	S	D	S	L
Query Conservation														.	.																																								.	.
Alig confidence														.	.																																								.	.
Template Conservation
Template Sequence		G	T	P	R	I	P	Q	V	F	R	A	L	K	G	D	G	R	V	F	H	H	S	Q	Y	L	E	H	M	A	K	P	M	K	I	A	I	I	G	G	G	Q	S	A	A	E	A	F	I	D	L	N	D	S	Y	P	S	V	Q	A	D	M	I	L	R	A	S	A	L	K	P	A	D	D	S	P	F	V	N	E	V
Template Known Secondary structure								G	G	G	G	G	G	T	T		T	T				G	G	G						T											S															T	T								S	S	S	S			B					T	T	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
																																																224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Y	H	F	W	N	S	G	V	V	I	R	H	N	E	E	Y	E	K	I	E	G	C	D	D	G	V	I	M	H	L	K	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Template Conservation
Template Sequence		F	A	P	K	F	T	D	L	I	Y	S	R	E	H	A	E	R	E	R	L	L	R	E	Y	H	N	T	N	Y	S	V	V	D	T	D	L	I	E	R	I	Y	G	V	F	Y	R	Q	K	V	S	G	I	P	R	H	A	F	R	C	M	T	T	V	E	R	A	T	A	T	A	Q	G	I	E	L	A	L	R	D	A
Template Known Secondary structure		G	S									T	S												T	G	G	G	T	S	S		B																			T				S				T	T										S	S	S								T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
					256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300				.	.	.	.	.	.	.	.	.	310	.	.						.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure		.	.	.																																														.	.	.													.	.	.	.	.
Query SS confidence		.	.	.																																														.	.	.													.	.	.	.	.
Query Sequence		.	.	.	S	G	K	K	L	K	A	D	C	L	L	Y	A	N	G	R	T	G	N	T	D	S	L	A	L	Q	N	I	G	L	E	T	D	S	R	G	Q	L	K	V	N	S	M	Y	Q	.	.	.	T	A	Q	P	H	V	Y	A	V	G	D	V	.	.	.	.	.	I	G	Y	P	S	L	A	S	A	A	Y	D
Query Conservation		.	.	.																																														.	.	.													.	.	.	.	.
Alig confidence		.	.	.																																			.											.	.	.													.	.	.	.	.
Template Conservation																																							.
Template Sequence		G	S	G	E	L	S	V	E	T	Y	D	A	V	I	L	A	T	G	Y	E	R	Q	L	H	R	Q	L	L	E	P	L	A	E	Y	L	G	D	.	H	E	I	G	R	D	Y	R	L	Q	T	D	E	R	C	K	V	A	I	Y	A	Q	G	F	S	Q	A	S	H	G	L	S	D	T	L	L	S	V	L	P	V	R
Template Known Secondary structure		T	T									S												S	S	S	S	S	S	G	G	G	G	G	G	B		S	.	S				T	T	S	B			B		T	T	B		S					S	S								T	T	T	T	S	S	T	T
Template Predicted Secondary structure																																							.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		325	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	R	I	A	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	E	I	S	G	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		416	.	.	.	420	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions