Job Description P27306 Confidence 100.00% Date Thu Jan 5 11:43:55 GMT 2012 Rank 41 Aligned Residues 369 % Identity 25% Template c3iwaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: crystal structure of a fad-dependent pyridine nucleotide-disulphide2 oxidoreductase from desulfovibrio vulgaris Resolution 2.30 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		A	I	V	I	G	S	G	P	G	G	E	G	A	A	M	G	L	V	K	Q	.	.	G	A	R	V	A	V	I	E	R	Y	Q	N	V	G	G	G	C	T	H	W	G	T	I	P	S	K	A	L	R	H	A	V	S	R	I	I	E	F	N	Q	N	P	L	Y	S	D	H	S	R	L	L	R	S	S	F	A	D	I
Query Conservation																						.	.
Alig confidence																						.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	V	V	I	G	A	V	A	L	G	P	K	A	A	C	R	F	K	R	L	D	P	E	A	H	V	T	M	I	D	Q	A	V	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S	S														T	T	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	H	A	D	N	V	I	N	Q	Q	T	R	M	R	Q	G	F	Y	E	R	N	H	C	E	I	L	Q	G	N	A	R	F	V	D	E	H	T	L	A	L	D	C	P	D	G	S	V	E	T	L	T	A	E	K	F	V	I	A	C	G	S	R	P	Y	H	P	T	D	V	D	F	T	H	P	R	I	Y	D	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	E	T	R	A	H	A	I	D	R	A	A	H	T	V	E	I	E	N	L	R	T	G	E	R	R	T	L	K	Y	D	K	L	V	L	A	L	G	S	K	A	N	R	P	P	V	E	G	M	D	L	A	G	V	T	P	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S								T	T	T	T							T	T	T									S														S		T	T	T	T	S	B	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																								83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		167	.	.	170	.	.	.	.	.									.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.			.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.																																.	.
Query SS confidence											.	.	.	.	.	.	.	.																																.	.
Query Sequence		D	S	I	L	S	M	H	H	E	.	.	.	.	.	.	.	.	P	R	H	V	L	I	Y	G	A	G	V	I	G	C	E	Y	A	S	I	F	R	G	M	D	V	K	V	D	L	I	N	.	.	T	R	D	R	L	L	A	F	L	D	Q	E	M	S	D	S	L	S	Y	H	F	W	N	S	G	V	V	I	R	H
Query Conservation											.	.	.	.	.	.	.	.																																.	.
Alig confidence											.	.	.	.	.	.	.	.																																.	.
Template Conservation
Template Sequence		T	N	L	D	E	A	E	F	V	Q	H	A	I	S	A	G	E	V	S	K	A	V	I	V	G	G	G	F	I	G	L	E	M	A	V	S	L	A	D	M	W	G	I	D	T	T	V	V	E	L	A	D	Q	I	M	P	G	F	T	S	K	S	L	S	Q	M	L	R	H	D	L	E	K	N	D	V	V	V	H	T
Template Known Secondary structure			S													T	T	S		S								S																							S	S	S	S	S	S	T	T	T	S															T	T
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	E	Y	E	K	I	E	G	C	D	D	G	V	I	M	H	L	K	S	G	K	K	L	K	A	D	C	L	L	Y	A	N	G	R	T	G	N	T	D	S	L	A	L	Q	N	I	G	L	E	T	D	S	R	G	Q	L	K	V	N	S	M	Y	Q	T	A	Q	P	H	V	Y	A	V	G	D	V	I	G	Y	P
Query Conservation
Alig confidence																																																	.	.
Template Conservation																																																	.	.
Template Sequence		G	E	K	V	V	R	L	E	G	E	N	G	K	V	A	R	V	I	T	D	K	R	T	L	D	A	D	L	V	I	L	A	A	G	V	S	P	N	T	Q	L	A	R	D	A	G	L	.	.	E	L	D	P	R	G	A	I	I	V	D	T	R	M	R	T	S	D	P	D	I	F	A	G	G	D	C	V	T	I	P
Template Known Secondary structure		S									S	S	S	B							S	S						S						S													T		.	.		B		T	T							T	T		B		S	S	T	T					G	G	G
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
												317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	S	L	A	S	A	A	Y	D	Q	G	R	I	A	A	Q	A	L	V	K	G	E	A	T	A	H	L	I	E	D	I	P	T	G	I	Y	T	I	P	E	I	S	S	V	G	K	T	E	Q	Q	L	T	A	M	K	V	P	Y	E	V	G	R	A	Q	F	K	H	L	A	R	A
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																																.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		N	L	V	T	G	K	P	G	F	F	P	L	G	S	M	A	N	R	Q	G	R	V	I	G	T	N	L	A	D	G	D	A	T	F	P	G	A	V	G	S	W	A	V	K	L	F	E	G	S	A	S	G	A	G	L	T	V	E	G	A	L	R	E	G	Y	D	A	V	N	V	H	V	E	.	.	.	.	.	.	.
Template Known Secondary structure		B	T	T	T	S	S							T	T														T	T								B									S	S																T	T										.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420				.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure																																				.	.	.
Query SS confidence																																				.	.	.
Query Sequence		Q	I	V	G	M	N	V	G	T	L	K	I	L	F	H	R	E	T	K	E	I	L	G	I	H	C	F	G	E	R	A	A	E	I	.	.	.	I	H	I	G	Q	A	I	M	E	Q	K	G	G	G	N	T	I	E	Y	F	V	N	T	T	F	N	Y	P	T	M	A	E	A	Y	R	V	A	A	L	N	G	L	N
Query Conservation																																				.	.	.
Alig confidence		.	.	.	.	.																														.	.	.												.	.	.																.	.	.	.
Template Conservation		.	.	.	.	.																																												.	.	.																.	.	.	.
Template Sequence		.	.	.	.	.	Q	I	M	T	L	Q	L	V	V	D	R	P	T	R	R	V	L	G	I	Q	G	F	S	T	L	G	D	A	L	T	A	R	I	N	A	V	A	T	M	L	A	S	K	.	.	.	P	T	V	E	D	I	S	N	A	E	V	V	M	D	I	.	.	.	.	V	N	V	A	G	N	V	A	D	N
Template Known Secondary structure		.	.	.	.	.											T	T	T		B									S																	T	T		.	.	.		B						T								.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.																																												.	.	.																.	.	.	.
Template SS confidence
							372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.				.	.	.	.	.	420	.	.	.	.	.	.	.	.	.					430	.	.	.	.	.	.	.	.	.
		464	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		459	460