Job Description P27306 Confidence 99.63% Date Thu Jan 5 11:43:55 GMT 2012 Rank 172 Aligned Residues 314 % Identity 17% Template c3cp8C_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl PDBTitle: crystal structure of gida from chlorobium tepidum Resolution 3.20 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	D	Y	D	A	I	V	I	G	S	G	P	G	G	E	G	A	A	M	G	L	V	K	Q	G	A	R	V	A	V	I	E	R	Y	Q	N	V	G	G	G	C	T	H	W	G	T	I	P	S	K	A	L	R	H	A	V	S	R	I	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.
Template Sequence		H	M	Y	D	V	I	V	V	G	A	G	H	A	G	C	E	A	A	L	A	V	A	R	G	G	L	H	C	L	L	I	T	S	D	L	S	A	V	A	R	M	S	.	.	.	C	N	P	A	I	G	G	V	A	K	G	Q	I	T	R	E	I	D	A	L	G	G	E	M	G	K	A	I	D	A	T	G	I	Q	F
Template Known Secondary structure												S													T	T								S		G	G	G	T	T			S	.	.	.	S		S					T	T												T		S
Template Predicted Secondary structure																																												.	.	.
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
				66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	F	N	Q	N	P	L	Y	S	D	H	S	R	L	L	R	S	S	F	A	D	I	L	N	H	A	D	N	V	I	N	Q	Q	T	R	M	R	Q	G	F	Y	E	R	N	H	C	E	I	L	Q	G	N	A	R	F	V	D	E	H	T	L	A	L	D	C	P	D	G	S	V	E	T	L	T	A	E	K	F	V
Query Conservation		.	.
Alig confidence		.	.																																		.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.
Template Sequence		R	M	L	N	R	S	K	G	P	A	M	H	S	P	R	A	Q	A	D	K	T	Q	Y	S	L	Y	M	R	R	I	V	E	H	E	P	.	.	.	.	.	.	.	.	.	N	I	D	L	L	Q	D	T	V	I	G	V	S	A	N	S	G	K	F	S	S	V	T	V	R	S	G	R	A	I	Q	A	K	A	A	I
Template Known Secondary structure						S	S	S		T	T	T																						T		T	.	.	.	.	.	.	.	.	.	T															T	T								T	T	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.										.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.																									190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	A	C	G	S	R	P	Y	H	P	T	D	V	D	F	T	H	P	R	I	Y	D	S	D	S	I	L	S	M	H	H	E	P	R	H	V	L	I	Y	G	A	G	V	I	G	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Y	A	S	I	F	R	G	M	D
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	C	G	T	F	L	N	G	L	I	H	I	G	M	D	H	F	P	G	G	R	S	T	A	E	P	P	V	E	G	L	T	E	S	L	A	S	L	G	F	S	F	G	R	L	K	T	G	T	P	P	R	I	D	S	R	S	V	D	Y	T	I	V	T	E	Q	P	G	D	V	D	P	V	P	F	S	F	S	S
Template Known Secondary structure					T	T		B	T						T	T						S	S	S	T	T	S			B		S								T	T																G	G	G	S		T	T	T	S							S	S				S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		V	K	V	D	L	I	N	T	R	D	R	L	L	A	F	L	D	Q	E	M	S	D	S	L	S	Y	H	F	W	N	S	G	V	V	I	R	H	N	E	E	Y	E	K	I	E	G	C	D	D	G	V	I	M	H	L	K	S	G	K	K	L	K	A	D	C	L	L	Y	A	N	G	R	T	G	N	T	D	S	L	.
Query Conservation																																																																																	.
Alig confidence																																																																																	.
Template Conservation
Template Sequence		T	S	V	A	N	R	N	L	V	S	C	Y	L	T	K	T	T	E	K	T	H	D	I	L	R	T	G	F	D	R	S	P	L	F	T	G	C	P	S	I	E	D	K	I	S	R	F	P	D	K	S	S	H	H	I	F	L	E	P	E	G	T	D	T	V	E	M	Y	V	N	G	F	S	T	S	L	P	E	D	I
Template Known Secondary structure					G	G	G																				T	T	T	T	T		T	T							S									S		S									S	S	T	T								T					S
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
											279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.											.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.							.
Query SS confidence		.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.							.
Query Sequence		.	.	.	.	.	.	.	.	.	A	L	Q	N	I	G	L	E	T	D	S	R	G	Q	L	K	V	.	.	.	.	.	.	.	.	.	.	N	S	M	Y	Q	T	.	A	Q	P	H	V	Y	A	V	G	D	V	I	G	Y	P	S	L	A	S	A	A	Y	D	Q	G	R	I	A	A	Q	A	L	V
Query Conservation		.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.							.
Alig confidence		.	.	.	.	.	.	.	.	.									.	.	.							.	.	.	.	.	.	.	.	.	.							.																	.
Template Conservation																			.	.	.																																								.
Template Sequence		Q	I	A	G	L	R	S	I	P	G	L	E	E	A	K	M	I	.	.	.	R	P	G	Y	A	I	E	Y	D	F	F	H	P	W	Q	I	R	S	T	M	E	T	R	P	V	E	N	L	F	F	A	G	Q	I	N	G	T	S	G	.	Y	E	E	A	A	A	Q	G	L	M	A	G	I	N	A	V
Template Known Secondary structure							T	T	S	T	T		T	T					.	.	.													G	G	G	B		T	T	S	B	B	S	S	S	B	T					S	G	G	G	T	B			.
Template Predicted Secondary structure																			.	.	.																																								.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.				.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.		.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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