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Job DescriptionP27306
Confidence100.00%DateThu Jan 5 11:43:55 GMT 2012
Rank37Aligned Residues418
% Identity22%Templatec3cgdB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:pyridine nucleotide-disulfide oxidoreductase, class i; PDBTitle: pyridine nucleotide complexes with bacillus anthracis coenzyme a-2 disulfide reductase: a structural analysis of dual nad(p)h3 specificity
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20......... 30.........40.........50.........60.........70.........80....
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Query Sequence  YDAIVIGSGPGGEGAAMGLVKQG. . ARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFA
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Template Sequence  MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNV. . . . . . . . . . . . . . . . .
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S
TT

SSS

SB
GGGTTSSS
GGGGBSS
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   1........10.........20.........30.........40.........50.........60...
 
   85....90.........100.........110.........120.........130.........140.........150.........160....
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Query Sequence  DILNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTHPRIY
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Template Sequence  . . . . . . . . . . . . . KTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVH
Template Known Secondary structure  .............TT

SSTTTTTTT


S







BTTTSBT
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   64.....70.........80.........90.........100.........110.........120.........130
 
   165....170..... ....180.........190.........200.........210.........220.........230......
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Query Sequence  DSDSILSMHHE. . . . . . . . PRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRH
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Template Sequence  LLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILT
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SSS




STT

SSSSSSTTS
TT

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   131........140.........150.........160.........170.........180.........190.........200.........210
 
   237..240.........250.........260.........270.........280.........290.........300.........310....
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Query Sequence  NEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIG. .
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Template Sequence  NENVKAFK. GNERVEAVETDKGTYKADLVLVSVGVKPNTDFLEGTNI. . RTNHKGAIEVNAYMQTNVQDVYAAGDCATHY
Template Known Secondary structure  S

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SSB

SS

S


S
GGGTTS

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B
TTS
B


TTSB
SSTT
GGGB
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   211....... .220.........230.........240.........250...... ...260.........270.........280.......
 
   315....320.........330.........340.........350.........360.........370.........380......
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Query Sequence  . . . . . . . . YPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARA
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Template Sequence  HVIKEIHDHIPIGTTANKQGRLAGLNMLDKRRAFKGTLGTGIIKFMNLTLARTGLNEKEAKGLHIPYKTVKVDSTNMAGY
Template Known Secondary structure  BTTT
S



TT






B


TT

T

SS
TT
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   288.290.........300.........310.........320.........330.........340.........350.........360.......
 
   387..390.........400.........410...... ...420.........430.........440...... ...450... ......460.
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Query Sequence  QIVGMNVGTLKILFHRETKEILGIHCFGER. AAEIIHIGQAIMEQKGGGNTIEYFVNTTFN. YPTMAEA. . . YRVAALNG
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Template Sequence  . YPNAKPLYLKLLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFNK. . . MSIHDLEDVDLSYAPPYNSVWDPIQQAARRA
Template Known Secondary structure  .STT

TTT
BSSSTT...
BGGGGGGS




TTT

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   368.370.........380.........390.........400.........410.. .......420.........430.........440...
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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