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Job DescriptionP27306
Confidence99.77%DateThu Jan 5 11:43:55 GMT 2012
Rank134Aligned Residues217
% Identity22%Templatec3cesB_
PDB info PDB header:rna binding proteinChain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme PDBTitle: crystal structure of e.coli mnmg (gida), a highly-conserved trna2 modifying enzyme
Resolution2.41 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MPHSYDYDAIVIGSGPGGEGAAMGLVKQGARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLR
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Template Sequence  MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQM. . . SCNPAIGGIGKG. . . . . . . . . . . . . . . . . . . .
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   1........10.........20.........30.........40..... ....50.......
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  SSFADILNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTH
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Template Sequence  . . . . . . . . HLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQAD. . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ........TT
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   58.60.........70.........80.........90.........100
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  PRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEY
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RVLYRQAVRTALENQPNLMIFQQAV
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TT

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   101........110.........120.....
 
   241........250. ........260.........270
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Query Sequence  EKIEGCDDGVI. MHLKSGKKLKADCLLYANG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  EDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQ
Template Known Secondary structure  SSSBTTS
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SGGG





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   126...130.........140.........150.........160.........170.........180.........190.........200.....
 
  
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Template Sequence  HGDNPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRSNLSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLP
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   219220.........230.........240.........250.........260.........270.........280.........290........
 
   271........280.........290... ......300. ........310.........320.........330....
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Query Sequence  . . . . . . . . . RTGNTDSLALQNIGLETDSRGQL. . . KVNSMYQT. AQPHVYAVGDVIGYPSLASAAYDQGRIAAQALV
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Template Sequence  FDVQMQIVRSMQGMENAKIVRPGYAIEYD. FFDPRDLKPTLESKFIQGLFFAGQINGTTG. YEEAAAQGLLAGLNAA
Template Known Secondary structure  TSTT
TT



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GGGB
TTSBBSSSBT
GGGGT


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   318.320.........330.........340...... ...350.........360.........370...... ...380.........390..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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