Job Description P27306 Confidence 100.00% Date Thu Jan 5 11:43:55 GMT 2012 Rank 11 Aligned Residues 457 % Identity 26% Template c2a8xA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase; PDBTitle: crystal structure of lipoamide dehydrogenase from2 mycobacterium tuberculosis Resolution 2.40 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	Y	D	A	I	V	I	G	S	G	P	G	G	E	G	A	A	M	G	L	V	K	Q	G	A	R	V	A	V	I	E	R	Y	Q	N	V	G	G	G	C	T	H	W	G	T	I	P	S	K	A	L	R	H	A	V	S	R	I	I	E	F	N	Q	N	P	L	Y	S	D	H	S	R	L	L	R	S	S	F	A
Query Conservation
Alig confidence																																			.
Template Conservation																																			.
Template Sequence		T	H	Y	D	V	V	V	L	G	A	G	P	G	G	Y	V	A	A	I	R	A	A	Q	L	G	L	S	T	A	I	V	E	P	.	K	Y	W	G	G	V	C	L	N	V	G	C	I	P	S	K	A	L	L	R	N	A	E	L	V	H	I	F	T	K	D	A	K	A	F	G	I	S	G	E	V	T	F	D	Y	G
Template Known Secondary structure												S													T	T								S	.	S		T	T							S																					T	T	T	T	T			S
Template Predicted Secondary structure																																			.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	L	N	H	A	D	N	V	I	N	Q	Q	T	R	M	R	Q	G	F	Y	E	R	N	H	C	E	I	L	Q	G	N	A	R	F	V	D	E	H	T	L	A	L	D	C	P	D	G	S	V	E	T	L	T	A	E	K	F	V	I	A	C	G	S	R	P	Y	H	P	T	D	V	D	F	T	H	P	R	I	Y
Query Conservation
Alig confidence																																																																													.
Template Conservation																																																																													.
Template Sequence		I	A	Y	D	R	S	R	K	V	A	E	G	R	V	A	G	V	H	F	L	X	K	K	N	K	I	T	E	I	H	G	Y	G	T	F	A	D	A	N	T	L	L	V	D	L	N	D	G	G	T	E	S	V	T	F	D	N	A	I	I	A	T	G	S	S	T	R	L	V	P	G	T	S	L	S	.	A	N	V	V
Template Known Secondary structure																									T	T											S	S	S	S							T	T	S																						T	T				B	.	T	T
Template Predicted Secondary structure																																																																													.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	D	S	I	L	S	M	H	H	E	P	R	H	V	L	I	Y	G	A	G	V	I	G	C	E	Y	A	S	I	F	R	G	M	D	V	K	V	D	L	I	N	T	R	D	R	L	L	A	F	L	D	Q	E	M	S	D	S	L	S	Y	H	F	W	N	S	G	V	V	I	R	H	N	E	E	Y	E	K	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	Y	E	E	Q	I	L	S	R	E	L	P	K	S	I	I	I	A	G	A	G	A	I	G	X	E	F	G	Y	V	L	K	N	Y	G	V	D	V	T	I	V	E	F	L	P	R	A	L	P	N	E	D	A	D	V	S	K	E	I	E	K	Q	F	K	K	L	G	V	T	I	L	T	A	T	K	V	E	S	I	A
Template Known Secondary structure								T		S	S			S								S													T	T								S	S	S	S	S	S	T	T	S																T						S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.				.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		G	C	D	D	G	V	I	M	H	L	K	S	G	.	.	.	K	K	L	K	A	D	C	L	L	Y	A	N	G	R	T	G	N	T	D	S	L	A	L	Q	N	I	G	L	E	T	D	S	R	G	Q	L	K	V	N	S	M	Y	Q	T	A	Q	P	H	V	Y	A	V	G	D	V	I	G	Y	P	S	L	A	S	A
Query Conservation															.	.	.
Alig confidence															.	.	.
Template Conservation
Template Sequence		D	G	G	S	Q	V	T	V	T	V	T	K	D	G	V	A	Q	E	L	K	A	E	K	V	L	Q	A	I	G	F	A	P	N	V	E	G	Y	G	L	D	K	A	G	V	A	L	T	D	R	K	A	I	G	V	D	D	Y	X	R	T	N	V	G	H	I	Y	A	I	G	D	V	N	G	L	L	Q	L	A	H	V
Template Known Secondary structure				S	S								S	S	S								S						S							S	S	S						T			B		T	T	S	S	B				T	T	S	B		S	S	T	T					G	G	G	G		S	S		S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		A	Y	D	Q	G	R	I	A	A	Q	A	L	V	K	G	E	A	T	A	H	.	L	I	E	D	I	P	T	G	I	Y	T	I	P	E	I	S	S	V	G	K	T	E	Q	Q	L	T	A	M	K	V	P	Y	E	V	G	R	A	Q	F	K	H	L	A	R	A	Q	I	V	G	M	N	V	G	T	L	K	I	L	F
Query Conservation																						.
Alig confidence																						.
Template Conservation
Template Sequence		A	E	A	Q	G	V	V	A	A	E	T	I	A	G	A	E	T	L	T	L	G	D	H	R	X	L	P	R	A	T	F	C	Q	P	N	V	A	S	F	G	L	T	E	Q	Q	A	R	N	E	G	Y	D	V	V	V	A	K	F	P	F	T	A	N	A	K	A	H	G	V	G	D	P	S	G	F	V	K	L	V	A
Template Known Secondary structure															T									G	G	G	S						S	S	S															T	T										G	G	G								T
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	E	T	K	E	I	L	G	I	H	C	F	G	E	R	A	A	E	I	I	H	I	G	Q	A	I	M	E	Q	K	G	G	G	N	T	I	E	Y	F	V	N	T	T	F	N	Y	P	T	M	A	E	A	Y	R	V	A	A	L	N	G	L	N	R	L	F
Query Conservation
Alig confidence																																	.	.	.
Template Conservation																																	.	.	.
Template Sequence		D	A	K	H	G	E	L	L	G	G	H	L	V	G	H	D	V	A	E	L	L	P	E	L	T	L	A	Q	R	W	D	.	.	.	L	T	A	S	E	L	A	R	N	V	H	T	H	P	T	X	S	E	A	L	Q	E	C	F	H	G	L	V	G	H	X	I
Template Known Secondary structure			T	T	T	T										T	T	G	G	G	G										T	T	.	.	.		B					T	T	S				T	T		T	T												S			S
Template Predicted Secondary structure																																	.	.	.
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430				.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.