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Job DescriptionP27306
Confidence100.00%DateThu Jan 5 11:43:55 GMT 2012
Rank38Aligned Residues420
% Identity22%Templatec1nhqA_
PDB info PDB header:oxidoreductase (h2o2(a))Chain: A: PDB Molecule:nadh peroxidase; PDBTitle: crystallographic analyses of nadh peroxidase cys42ala and cys42ser2 mutants: active site structure, mechanistic implications, and an3 unusual environment of arg303
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  MPHSYDYDAIVIGSGPGGEGAAMGLVKQ. . GARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRL
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Template Sequence  MK. . . . . . VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSSGMQLYLEGKVKDVNSVRYMTG. . . . . . . . . . .
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SS
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GGGSBS

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   1. .......10.........20.........30.........40.........50.........60...
 
   7980.........90.........100.........110.........120.........130.........140.........150........
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Query Sequence  LRSSFADILNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSRPYHPTDVDF
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Template Sequence  . . . . . . . . . . . . . . . . . . . . EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGK
Template Known Secondary structure  ....................TT
TTTTTTTT


S






STTT
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   64.....70.........80.........90.........100.........110.........120...
 
   159160.........170..... ....180.........190.........200.........210 .........220.........
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Query Sequence  THPRIYDSDSILSMHHE. . . . . . . . PRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDR. LLAFLDQEMSDSLSYHFWN
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Template Sequence  DLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA
Template Known Secondary structure  T
BT

ST
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STT

SSSSTTTTT

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   124.....130.........140.........150.........160.........170.........180.........190.........200...
 
   230.........240.........250.........260.........270.........280.........290.........300.........
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Query Sequence  SGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAV
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Template Sequence  NNITIATGETVERYE. GDGRVQKVVTDKNAYDADLVVVAVGVRPNTAWL. . . KGTLELHPNGLIKTDEYMRTSEPDVFAV
Template Known Secondary structure  TT
S

.SSBSS

S
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GGG...TTTS
B
TTS
B


TT
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SSTT
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   204.....210........ .220.........230.........240.........250. ........260.........270.........
 
   310...... ...320.........330.........340.........350.........360.........370.........
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Query Sequence  GDVIGYP. . . . . . . . . . SLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQ
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Template Sequence  GDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVV
Template Known Secondary structure  GGGB
GGGT



TSSS






B


TT

T


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   280.........290.........300.........310.........320.........330.........340.........350.........
 
   380.........390.........400.........410...... ...420.........430.........440....... ..450... .
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Query Sequence  FKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGER. AAEIIHIGQAIMEQKGGGNTIEYFVNTTFNY. PTMAEA. . . Y
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Template Sequence  EDYLMDF. NPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAK. . . MTIEDLAYADFFFQPAFDKPWNII
Template Known Secondary structure  SS
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TTT
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   360...... ...370.........380.........390.........400.........410. ........420.........430.....
 
   455....460.....
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Query Sequence  RVAALNGLNRL
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Template Sequence  NTAALEAVKQE
Template Known Secondary structure  T
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   436...440......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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