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Job DescriptionP27306
Confidence100.00%DateThu Jan 5 11:43:55 GMT 2012
Rank43Aligned Residues420
% Identity17%Templatec1m6iA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:programmed cell death protein 8; PDBTitle: crystal structure of apoptosis inducing factor (aif)
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30 .........40.........50.........60.........70.........80...
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Query Sequence  DYDAIVIGSGPGGEGAAMGLVKQGA. . RVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSF
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Template Sequence  HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMR. . . . PPLSKELWFSPNVTKTLRFKQWNGKERSIYFQPP
Template Known Secondary structure  S
SSTT
SSSS

B
S....GGGGTGGG


T

TTS
SBSS
G
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   131........140.........150.........160.........170.. .......180.........190.........200......
 
   84.....90.........100.........110.........120.........130.........140.........150.........
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Query Sequence  ADILNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSRPYHPTDVDFT. . . .
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Template Sequence  . . . . . . . . . . . SFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEV
Template Known Secondary structure  ...........GGSB
TTTTTTSTT
T

GGGTTTS






TS
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   209210.........220.........230.........240.........250.........260.........270.......
 
   160.........170.........180.........190......... 200.........210.........220........
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Query Sequence  . . . . . . HPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMD. . . . . VKVDLINTRDRLLAFLDQEMSDSLSYHFW
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Template Sequence  KSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVR
Template Known Secondary structure  T

S
S

ST

SSSSTTTTTS
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   278.280.........290.........300.........310.........320.........330.........340.........350.......
 
   229230.........240.........250.........260.........270.........280.........290.........300........
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Query Sequence  NSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYA
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Template Sequence  REGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSD. FGGFRVNAELQAR. SNIWV
Template Known Secondary structure  TTT

S

TTTTS
S




TTT

B
TT.T
S

TT
.TT
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   358.360.........370.........380.........390.........400.........410....... ..420.........430 .....
 
   309310.... .....320.........330.........340... ......350.........360.........
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Query Sequence  VGDVIG. . . . . . . . . YPSLASAAYDQGRIAAQALVKGEATAHLI. . . . . . . . . . EDIPTGIYTIPEISSVGKTEQQLTAM
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Template Sequence  AGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQD
Template Known Secondary structure 
GGGTTT



TS








SSTT



TTS



TT
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   436...440.........450.........460.........470.........480.........490.........500.........510.....
 
   370.........380.........390.........400.........410.........420.........430.........440.......
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Query Sequence  KVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNY
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Template Sequence  NPKSATEQSGTGIRSESETESEASYGKGVIFYLRDKVVVGIVLWNIF. . NRMPIARKIIKDG. . . EQHEDLNEVAKLF
Template Known Secondary structure  SS
S
S
S





TTS

..S

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B
S
STTGGGG
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   516...520.........530.........540.........550.........560.. .......570..... ....580........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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