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Job DescriptionP27306
Confidence99.76%DateThu Jan 5 11:43:55 GMT 2012
Rank140Aligned Residues249
% Identity24%Templatec1kf6A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:fumarate reductase flavoprotein; PDBTitle: e. coli quinol-fumarate reductase with bound inhibitor hqno
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20......... 30.........40.........50.........60.........70.........80
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Query Sequence  HSYDYDAIVIGSGPGGEGAAMGLVKQG. . ARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLR
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Template Sequence  QTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQD
Template Known Secondary structure 
S

S
TT

SS
GGGSGGGG

S



STT

TTT
S
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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  SSFADILNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTH
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Template Sequence  V. VDYFVHHCPTEMTQLELWGCPWSRR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  .TT



B
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   81 ........90.........100......
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  PRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEY
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFV
Template Known Secondary structure  .............................TTSSB

B

TT
SS


STT
TT
TTT
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   107..110.........120.........130.........140.........150.......
 
   241........250....... ..260.........270
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Query Sequence  EKIEGCDDGVIMHLKSG. . . . . . KKLKADCLLYANG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLP
Template Known Secondary structure  TTTTTT
S





GGGSSSBSS
TT
S
TTT

STT

T
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   158.160.........170.........180.........190.........200.........210.........220.........230.......
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLR
Template Known Secondary structure  TT

B

TTT

TT


GGGGTTT
S


SS


TTSGGGS
T
SB

TT

B
G
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   238.240.........250.........260.........270.........280.........290.........300.........310.......
 
   271........280.........290.........300.........310.... .....320
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . RTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIG. . . . . . . . . YPSLAS
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Template Sequence  HLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLA
Template Known Secondary structure  GG




TTTS




TTSB
SSBT
GGG
SSSTTS

TT
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   318.320.........330.........340.........350.........360.........370.........380.........390.......
 
   321........330....
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Query Sequence  AAYDQGRIAAQALV
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Template Sequence  ELVVFGRLAGEQAT
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   398.400.........410.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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