Job Description P27306 Confidence 100.00% Date Thu Jan 5 11:43:55 GMT 2012 Rank 42 Aligned Residues 429 % Identity 17% Template c1gv4A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:programed cell death protein 8; PDBTitle: murine apoptosis-inducing factor (aif) Resolution 2.0 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		M	P	H	S	Y	D	Y	D	A	I	V	I	G	S	G	P	G	G	E	G	A	A	M	G	L	V	K	Q	.	.	G	A	R	V	A	V	I	E	R	Y	Q	N	V	G	G	G	C	T	H	W	G	T	I	P	S	K	A	L	R	H	A	V	S	R	I	I	E	F	N	Q	N	P	L	Y	S	D	H	S	R	L
Query Conservation																														.	.
Alig confidence																														.	.																		.	.	.	.
Template Conservation																																																	.	.	.	.
Template Sequence		I	R	A	P	S	H	V	P	F	L	L	I	G	G	G	T	A	A	F	A	A	A	R	S	I	R	A	R	D	P	G	A	R	V	L	I	V	S	E	D	P	E	L	P	Y	M	R	.	.	.	.	P	P	L	S	K	E	L	W	F	S	D	D	P	N	V	T	K	T	L	Q	F	R	Q	W	N	G	K	E	R
Template Known Secondary structure														S		S														S	T	T								S	S	S	S			B		S	.	.	.	.	G	G	G	G	T	G	G	G	S				T	T										T	T	S
Template Predicted Secondary structure																																																	.	.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.					.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	S	S	F	A	D	I	L	N	H	A	D	N	V	I	N	Q	Q	T	R	M	R	Q	G	F	Y	E	R	N	H	C	E	I	L	Q	G	N	A	R	F	V	D	E	H	T	L	A	L	D	C	P	D	G	S	V	E	T	L	T	A	E	K	F	V	I	A	C	G	S	R	P	Y	H	P	T	D	V	D	F
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.
Template Sequence		S	I	Y	F	Q	P	P	.	.	.	.	.	.	.	.	.	S	F	Y	V	S	A	Q	D	L	P	N	I	E	N	G	G	V	A	V	L	T	G	K	K	V	V	H	L	D	V	R	G	N	M	V	K	L	N	D	G	S	Q	I	T	F	E	K	C	L	I	A	T	G	G	T	P	R	S	L	S	A	I	D	R
Template Known Secondary structure			S	B	S	S		G	.	.	.	.	.	.	.	.	.	G	G		B		G	G	G	G	G	G	S	T	T								S								T	T	T	T					T	T	S																								T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.
Template SS confidence
		201	.	.	.	.	.	.										.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		159	160											.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.						200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.
Query Sequence		T	H	.	.	.	.	.	.	.	.	.	.	P	R	I	Y	D	S	D	S	I	L	S	M	H	H	E	P	R	H	V	L	I	Y	G	A	G	V	I	G	C	E	Y	A	S	I	F	R	G	M	D	.	.	.	.	.	V	K	V	D	L	I	N	T	R	D	R	L	L	A	F	L	D	Q	E	M	S	D	S	L
Query Conservation				.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.
Template Conservation
Template Sequence		A	G	A	E	V	K	S	R	T	T	L	F	R	K	I	G	D	F	R	A	L	E	K	I	S	R	E	V	K	S	I	T	V	I	G	G	G	F	L	G	S	E	L	A	C	A	L	G	R	K	S	Q	A	S	G	I	E	V	I	Q	L	F	P	E	K	G	N	M	G	K	I	L	P	Q	Y	L	S	N	W	T
Template Known Secondary structure		S						T	T						S												T	T		S								S																										S	S	S	S	T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		S	Y	H	F	W	N	S	G	V	V	I	R	H	N	E	E	Y	E	K	I	E	G	C	D	D	G	V	I	M	H	L	K	S	G	K	K	L	K	A	D	C	L	L	Y	A	N	G	R	T	G	N	T	D	S	L	A	L	Q	N	I	G	L	E	T	D	S	R	.	G	Q	L	K	V	N	S	M	Y	Q	T	A
Query Conservation																																																																					.
Alig confidence																																																														.	.						.
Template Conservation																																																														.	.
Template Sequence		M	E	K	V	K	R	E	G	V	K	V	M	P	N	A	I	V	Q	S	V	G	V	S	G	G	R	L	L	I	K	L	K	D	G	R	K	V	E	T	D	H	I	V	T	A	V	G	L	E	P	N	V	E	L	A	K	T	G	G	L	.	.	E	I	D	S	D	F	G	G	F	R	V	N	A	E	L	Q	A	R
Template Known Secondary structure							T	T	T						S										T	T							T	T	S						S													T					T	T		.	.		B		T	T	T		S					T	T	S
Template Predicted Secondary structure																																																														.	.
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.			.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.										.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.																						340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	P	H	V	Y	A	V	G	D	V	I	G	.	.	.	.	.	.	.	.	.	Y	P	S	L	A	S	A	A	Y	D	Q	G	R	I	A	A	Q	A	L	V	K	G	E	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	H	L	I	E	D	I	P	T	G	I	Y	T
Query Conservation														.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.												.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	S	N	I	W	V	A	G	D	A	A	C	F	Y	D	I	K	L	G	R	R	R	V	E	H	H	D	H	A	V	V	S	G	R	L	A	G	E	N	M	T	G	A	A	K	P	Y	W	H	Q	S	M	F	W	S	D	L	G	P	D	V	G	Y	E	A	I	G	L	V	D	S	S	L	P	T	V	G	V	F	A
Template Known Secondary structure		.	T	T					G	G	G						T	T	T																							T	T															S	S	T	T											T	T	S
Template Predicted Secondary structure		.
Template SS confidence
			430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.									.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.		.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.																											.
Query SS confidence																					.	.	.	.	.	.	.	.																											.
Query Sequence		I	P	E	I	S	S	V	G	K	T	E	Q	Q	L	T	A	M	K	V	.	.	.	.	.	.	.	.	P	Y	E	V	G	R	A	Q	F	K	H	L	A	R	A	Q	I	V	G	M	N	V	G	T	L	K	.	I	L	F	H	R	E	T	K	E	I	L	G	I	H	C	F	G	E	R	A	A	E	I	I	H	I
Query Conservation																					.	.	.	.	.	.	.	.																											.
Alig confidence																					.	.	.	.	.	.	.	.																											.																		.	.
Template Conservation																																																																									.	.
Template Sequence		K	A	T	A	Q	D	N	P	K	S	A	T	E	Q	S	G	T	G	I	R	S	E	S	E	T	E	S	E	A	S	E	I	T	I	P	P	S	A	P	A	V	P	Q	V	P	V	E	G	E	D	Y	G	K	G	V	I	F	Y	L	R	D	K	V	V	V	G	I	V	L	W	N	.	.	V	F	N	R	M	P	I
Template Known Secondary structure					T	T		S									S		S								S				S														S				G	G	G										S	S	S	B								S	.	.			S
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.			580	.	.	.	.	.	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	A	I	M	E	Q	K	G	G	G	N	T	I	E	Y	F	V	N	T	T	F	N	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	R	K	I	I	K	D	G	E	Q	H	E	D	L	N	E	V	A	K	L	F	N	I	H
Template Known Secondary structure											B		S							G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		587	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610