Job Description P27306 Confidence 99.96% Date Thu Jan 5 11:43:55 GMT 2012 Rank 69 Aligned Residues 300 % Identity 15% Template c1fcdB_ PDB info PDB header:electron transport(flavocytochrome) Chain: B: PDB Molecule:flavocytochrome c sulfide dehydrogenase (flavin- PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution Resolution 2.53 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		A	I	V	I	G	S	G	P	G	G	E	G	A	A	M	G	L	V	K	Q	G	.	.	A	R	V	A	V	I	E	R	Y	Q	N	V	G	G	G	C	T	H	W	G	T	I	P	S	K	A	L	R	H	A	V	S	R	I	I	E	F	N	Q	N	P	L	Y	S	D	H	S	R	L	L	R	S	S	F	A	D	I
Query Conservation																							.	.
Alig confidence																							.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	V	V	V	G	G	G	T	G	G	A	T	A	A	K	Y	I	K	L	A	D	P	S	I	E	V	T	L	I	E	P	N	T	D	Y	Y	T	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	L	S	N	E	V	I	G	G	D	R	K	L	E	S	I	K	H	G	Y	D	G	L
Template Known Secondary structure								S	T	T										T	T		T	T	S							S		S	S				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T						T	S	S		G	G	G	G				S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.																				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	H	A	D	N	V	I	N	Q	Q	T	R	M	R	Q	G	F	Y	E	R	N	H	C	E	I	L	Q	G	N	A	R	F	V	D	E	H	T	L	A	L	D	C	P	D	G	S	V	E	T	L	T	A	E	K	F	V	I	A	C	G	S	R	P	Y	H	P	T	D	V	D	F	T	H	P	R	I	Y	D	S
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Sequence		R	A	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	Q	V	V	H	D	S	A	T	G	I	D	P	D	K	K	L	V	K	T	A	G	G	A	.	.	E	F	G	Y	D	R	C	V	V	A	P	G	I	E	L	I	Y	D	K	I	E	G	Y	S	E	E	A	A	A	K	L
Template Known Secondary structure				T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T						S								T	T	T						T	S		.	.					S													T	T	S	T	T			T	T	G	G	G	T	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template SS confidence
		66	.	.																				.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		167	.	.	170	.															.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.										.	.	190	.	.	.	.	.	.	.	.	.					200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.													.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.													.	.	.	.
Query Sequence		D	S	I	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	H	H	E	P	R	H	V	L	I	Y	G	A	G	V	I	.	.	.	.	.	.	.	.	.	G	C	E	Y	A	S	I	F	R	G	M	D	.	.	.	.	V	K	V	D	L	I	N	T	R	D	R	L	L	A	F	L	D	Q	E	M
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.													.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation
Template Sequence		P	H	A	W	K	A	G	E	Q	T	A	I	L	R	K	Q	L	E	D	M	A	D	G	G	T	V	V	I	A	P	P	A	A	P	F	R	C	P	P	G	P	Y	E	R	A	S	Q	V	A	Y	Y	L	K	A	H	K	P	M	S	K	V	I	I	L	D	S	S	Q	T	F	S	K	Q	S	Q	F	S	K	G	W
Template Known Secondary structure						S														S	S		T	T										S	S		B		T	T																		T	T								S		S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		S	D	S	L	S	Y	H	F	W	N	S	G	V	V	I	R	H	N	E	E	Y	E	K	I	E	G	C	D	D	G	V	I	M	H	L	K	S	G	K	K	L	K	A	D	C	L	L	Y	A	N	G	R	T	G	N	T	D	S	L	A	L	Q	N	I	G	L	E	T	D	S	R	G	Q	L	K	V	N	S	M	.
Query Conservation																																																																																	.
Alig confidence																																																									.									.	.	.													.
Template Conservation																																																									.									.	.	.
Template Sequence		E	R	L	Y	G	F	G	T	E	N	A	M	I	E	W	H	P	G	P	D	S	A	V	V	K	V	D	G	G	E	M	M	V	E	T	A	F	G	D	E	F	K	A	D	V	I	N	L	I	P	P	Q	R	A	G	.	K	I	A	Q	I	A	G	L	.	.	.	T	N	D	A	G	W	C	P	V	D	I	K	T
Template Known Secondary structure							T	T	T	T	T		S						T	T	T	T				S				T	T	T					T	T							S												.							T		.	.	.		B	T	T	T	B	B		B		S	S	S
Template Predicted Secondary structure																																																									.									.	.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.				.	.	270	.	.	.	.	.	.	.	.	.	280
		299	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.				.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.					.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure				.																.	.	.																				.	.	.	.
Query SS confidence				.																.	.	.																				.	.	.	.
Query Sequence		Y	Q	.	T	A	Q	P	H	V	Y	A	V	G	D	V	I	G	Y	.	.	.	P	S	L	A	S	A	A	Y	D	Q	G	R	I	A	A	Q	A	L	V	.	.	.	.	K	G	E	A	T	A	H	L	I	E	D	I	P	T	G	I	Y	T
Query Conservation				.																.	.	.																				.	.	.	.
Alig confidence				.																.	.	.																				.	.	.	.
Template Conservation
Template Sequence		F	E	S	S	I	H	K	G	I	H	V	I	G	D	A	S	I	A	N	P	M	P	K	S	G	Y	S	A	N	S	Q	G	K	V	A	A	A	A	V	V	V	L	L	K	G	E	E	P	G	T	P	S	Y	L	N	T	C	Y	S	I	L	A
Template Known Secondary structure			B	B	S	S	S	T	T					G	G	G	B			S	S	S		B	S																				T	T								B			B
Template Predicted Secondary structure
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions