Job Description P27306 Confidence 99.94% Date Thu Jan 5 11:43:55 GMT 2012 Rank 94 Aligned Residues 293 % Identity 19% Template c1f6mF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of a complex between thioredoxin2 reductase, thioredoxin, and the nadp+ analog, aadp+ Resolution 2.95 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	Y	D	Y	D	A	I	V	I	G	S	G	P	G	G	E	G	A	A	M	G	L	V	K	Q	G	A	R	V	A	V	I	E	R	Y	Q	N	V	G	G	G	C	T	H	W	G	T	I	P	S	K	A	L	R	H	A	V	S	R	I	I	E	F	N	Q	N	P	L	Y	S	D	H	S	R	L	L	R	S	S
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	T	K	H	S	K	L	L	I	L	G	S	G	P	A	G	Y	T	A	A	V	Y	A	A	R	A	N	L	Q	P	V	L	I	T	G	M	E	K	G	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	T	T	T	E	V	E	N	W	P	G	D	P	N	D	L	T
Template Known Secondary structure														S												T	T	T									S	S	T	T		G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G		S	B				S	T	T			S	S		B
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.																						.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.				.	.
Predicted Secondary structure																																																																													.	.	.
Query SS confidence																																																																													.	.	.
Query Sequence		F	A	D	I	L	N	H	A	D	N	V	I	N	Q	Q	T	R	M	R	Q	G	F	Y	E	R	N	H	C	E	I	L	Q	G	N	A	R	F	V	D	E	H	T	L	A	L	D	C	P	D	G	S	V	E	T	L	T	A	E	K	F	V	I	A	C	G	S	R	P	Y	H	P	T	D	V	D	.	.	.	F	T
Query Conservation																																																																													.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	P	L	L	M	E	R	M	H	E	H	A	T	K	F	E	T	E	I	I	F	D	H	I	N	K	V	D	L	Q	N	R	P	F	R	L	N	G	.	.	.	.	.	.	.	.	.	.	.	.	D	N	G	E	Y	T	C	D	A	L	I	I	A	T	G	A	S	A	R	Y	L	G	L	P	S	E	E	A	F	K
Template Known Secondary structure																T	T														S	S	S	S						.	.	.	.	.	.	.	.	.	.	.	.	T	T																											T	B
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.													.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	P	R	I	Y	D	S	D	S	I	L	S	M	H	H	E	P	R	H	V	L	I	Y	G	A	G	V	I	G	C	E	Y	A	S	I	F	R	G	M	D	V	K	V	D	L	I	N	T	R	D	R	L	L	A	F	L	D	Q	E	M	S	D	S	L	S	Y	H	F	W	N	S	G	V	V	I	R	H	N	E	E
Query Conservation
Alig confidence																																																						.	.
Template Conservation																																																						.	.
Template Sequence		G	R	G	V	S	A	S	A	T	C	D	G	F	F	Y	R	N	Q	K	V	A	V	I	G	G	G	N	T	A	V	E	E	A	L	Y	L	S	N	I	A	S	E	V	H	L	I	H	R	R	D	G	F	.	.	R	A	E	K	I	L	I	K	R	L	M	D	K	V	E	N	G	N	I	I	L	H	T	N	R	T
Template Known Secondary structure		T	T	T			S						G	G	G	G	T	T	S							S	S											T	T	T	S	S							S	S	S	S		.	.		S															S	S						S
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.								.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.						.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.																																											.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.																																											.	.	.	.	.
Query Sequence		Y	E	K	I	E	G	C	D	D	G	V	I	M	H	L	.	.	.	.	.	.	.	K	S	G	K	K	L	K	A	D	C	L	L	Y	A	N	G	R	T	G	N	T	D	S	L	A	L	Q	N	I	G	L	E	T	D	S	R	G	Q	L	K	V	N	.	.	.	.	.	S	M	Y	Q	T	A	Q	P	H	V	Y
Query Conservation																	.	.	.	.	.	.	.																																											.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.																																.	.	.	.								.	.	.	.	.
Template Conservation																																																							.	.	.	.
Template Sequence		L	E	E	V	T	G	D	Q	M	G	V	T	G	V	R	L	R	D	T	Q	N	S	D	N	I	E	S	L	D	V	A	G	L	F	V	A	I	G	H	S	P	N	T	A	I	F	E	G	Q	L	E	L	E	.	.	.	.	N	G	Y	I	K	V	Q	S	G	I	H	G	N	A	T	Q	T	S	I	P	G	V	F
Template Known Secondary structure									T	T										S	S	S	T	T								S											S		S	T	T	T	T	T	S				.	.	.	.	T	T							S	S	S	S		T	T	B		S	S	T	T
Template Predicted Secondary structure																																																							.	.	.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.					260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		308	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		A	V	G	D	V	I	G	Y	.	P	S	L	A	S	A	A	Y	D	Q	G	R	I	A	A	Q	A	L	V
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		A	A	G	D	V	M	D	H	I	Y	R	Q	A	I	T	S	A	G	T	G	C	M	A	A	L	D	A	E
Template Known Secondary structure				G	G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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