Job Description P27306 Confidence 99.96% Date Thu Jan 5 11:43:55 GMT 2012 Rank 66 Aligned Residues 280 % Identity 16% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	S	Y	D	Y	D	A	I	V	I	G	S	G	P	G	G	E	G	A	A	M	G	L	V	K	Q	G	A	R	V	A	V	I	E	R	Y	Q	N	V	G	G	G	C	T	H	W	G	T	I	P	S	K	A	L	R	H	A	V	S	R	I	I	E	F	N	Q	N	P	L	Y	S	D	H	S	R	L	L	R	S
Query Conservation
Alig confidence					.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	D	S	.	.	.	.	V	L	I	V	G	A	G	P	S	G	S	E	A	A	R	V	L	M	E	S	G	Y	T	V	H	L	T	D	T	A	E	K	I	G	G	H	L	N	Q	V	A	A	L	P	G	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					.	.	.	.							S													T	T								S	S	S	S	T	T	T	T					T	T	S	T	T		G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		389	390	.					.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		S	F	A	D	I	L	N	H	A	D	N	V	I	N	Q	Q	T	R	M	R	Q	G	F	Y	E	R	N	H	C	E	I	L	Q	G	N	A	R	F	V	D	E	H	T	L	A	L	D	C	P	D	G	S	V	E	T	L	T	A	E	K	F	V	I	A	C	G	S	R	P	Y	H	P	T	D	V	D	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	W	S	Y	H	R	D	Y	R	E	T	Q	I	T	K	L	L	K	K	N	K	E	S	Q	L	A	L	G	Q	K	P	M	T	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	L	Q	Y	G	A	D	K	V	I	I	A	T	G	A	R	W	N	T	D	G	T	N	C	L	T	H	D
Template Known Secondary structure		G	G	G																T		T	T						S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	S			S												S	S				T	T	T	S	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.																	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
								158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																													.	.	.
Query SS confidence		.	.	.	.	.	.																													.	.	.
Query Sequence		.	.	.	.	.	.	F	T	H	P	R	I	Y	D	S	D	S	I	L	S	M	H	H	E	P	R	H	V	L	I	Y	G	A	G	.	.	.	V	I	G	C	E	Y	A	S	I	F	R	G	M	D	V	K	V	D	L	I	N	T	R	D	R	L	L	A	F	L	D	Q	E	M	S	D	S	L	S	Y	H	F	W
Query Conservation		.	.	.	.	.	.																													.	.	.
Alig confidence		.	.	.	.	.	.																													.	.	.
Template Conservation
Template Sequence		P	I	P	G	A	D	A	S	L	P	D	Q	L	T	P	E	Q	V	M	D	G	K	K	K	I	G	K	R	V	V	I	L	N	A	D	T	Y	F	M	A	P	S	L	A	E	K	L	A	T	A	G	H	E	V	T	I	V	S	G	V	H	L	A	N	Y	M	H	F	T	L	E	Y	P	N	M	M	R	R	L	H
Template Known Secondary structure				T	T			T	T	S	T	T										T		S				S										S	S												T	T								S	S		T	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.																				.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	S	G	V	V	I	R	H	N	E	E	Y	E	K	I	E	G	C	D	D	G	V	I	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	L	K	S	G	K	K	L	K	A	D	C	L	L	Y	A	N	G	R	T	G	N	T	D	S	L	A	L	Q	N	I	G	L	E	T	D	S
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		E	L	H	V	E	E	L	G	D	H	F	C	S	R	I	E	P	G	R	M	E	I	Y	N	I	W	G	D	G	S	K	R	T	Y	R	G	P	G	V	S	P	R	D	A	N	T	S	H	R	W	I	E	F	D	S	L	V	L	V	T	G	R	H	S	E	C	T	L	W	N	E	L	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T						S								T	T							T	T		S		S							T	T	S		S	S												S						S													.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	Q	L	K	V	N	S	M	Y	Q	T	A	Q	P	H	V	Y	A	V	G	D	V	I	G	Y	P	S	L	A	S	A	A	Y	D	Q	G	R	I	A	A	Q	A	L	V	K	G	E	A
Query Conservation
Alig confidence		.	.																								.
Template Conservation		.	.																								.
Template Sequence		.	.	K	A	R	E	S	E	W	A	E	N	D	I	K	G	I	Y	L	I	G	D	A	E	A	.	P	R	L	I	A	D	A	T	F	T	G	H	R	V	A	R	E	I	E	E	A	N	P
Template Known Secondary structure		.	.			T	G	G	G	T	G	G	G	T								G	G	G	T	S	.																	T	T	T	S	S		T
Template Predicted Secondary structure		.	.																								.
Template SS confidence
				655	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.		.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions