Phyre 2 alignment of P27306 with c1chuA

Job Description P27306
Confidence 99.81% Date Thu Jan 5 11:43:55 GMT 2012

Rank 127 Aligned Residues 311

% Identity 14% Template c1chuA_

PDB info PDB header:flavoenzyme Chain: A: PDB Molecule:protein (l-aspartate oxidase); PDBTitle: structure of l-aspartate oxidase: implications for the2 succinate dehydrogenase/ fumarate reducatse family

Resolution 2.20 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence	M	P	H	S	Y	D	Y	D	A	I	V	I	G	S	G	P	G	G	E	G	A	A	M	G	L	V	K	Q	G	A	R	V	A	V	I	E	R	Y	Q	N	V	G	G	G	C	T	H	W	G	T	I	P	S	K	A	L	R	H	A	V	S	R	I	I	E	F	N	Q	N	P	L	Y	S	D	H	S	R	L	L	R
Query Conservation
Alig confidence					.																									.																.	.	.	.	.	.	.	.	.	.
Template Conservation					.																									.																.	.	.	.	.	.	.	.	.	.
Template Sequence	L	P	E	H	.	S	C	D	V	L	I	I	G	S	G	A	A	G	L	S	L	A	L	R	L	A	D	Q	H	.	Q	V	I	V	L	S	K	G	P	V	T	E	F	D	E	.	.	.	.	.	.	.	.	.	.	T	D	S	I	D	S	H	V	E	D	T	L	I	A	G	A	G	I	C	D	R	H	A	V	E
Template Known Secondary structure			S		.			S							S											T	T	T	S	.							S	S		T	T				S	.	.	.	.	.	.	.	.	.	.															T	T	T
Template Predicted Secondary structure					.																									.																.	.	.	.	.	.	.	.	.	.
Template SS confidence
	4	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.											.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.

	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.												.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.						.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Query Sequence	S	S	F	A	D	I	L	N	H	A	D	N	V	I	N	Q	.	.	.	.	.	.	.	.	.	.	.	Q	T	R	M	R	Q	G	F	Y	E	R	N	H	C	E	I	L	Q	G	N	A	R	F	V	D	E	H	.	.	.	.	.	T	L	A	L	D	C	P	D	G	S	V	E	T	L	T	A	E	K	F	V	I
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Template Conservation
Template Sequence	F	V	A	S	N	A	R	S	C	V	Q	W	L	I	D	Q	G	V	L	T	T	L	V	S	K	A	L	N	H	P	N	I	R	V	L	E	R	T	N	A	V	D	L	I	V	S	D	K	I	G	L	P	G	T	R	R	V	V	G	A	W	V	W	N	R	N	K	E	T	V	E	T	C	H	A	K	A	V	V	L
Template Known Secondary structure																T	T													T	T						S									G	G	G	T	T			S	S		B									T	T	T	T								S
Template Predicted Secondary structure
Template SS confidence
	85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.

	145	.	.	.	.	150	.	.	.	.	.					.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.														.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	A	C	G	S	R	P	Y	H	P	T	D	.	.	.	.	V	D	F	T	H	P	R	I	Y	D	S	D	S	I	L	S	M	H	H	E	P	R	H	V	L	I	Y	G	A	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	C	E	Y	A	S	I	F	R	G	M	D	V	K	V	D	L	I	N	T
Query Conservation												.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	T	G	G	A	S	K	V	Y	Q	Y	T	T	N	P	D	I	S	S	G	D	G	I	A	M	A	W	R	A	G	C	R	V	A	N	L	E	F	N	Q	F	H	P	T	A	L	Y	H	P	Q	A	R	N	F	L	L	T	E	A	L	R	G	E	G	A	Y	L	K	R	P	D	G	T	R	F	M	P	D	F	D
Template Known Secondary structure						G	G	G	S	S	S	B	S		G	G	G		S										T	T						T	T											S	T	T		T	T		B								T	T						T	T	S		B		G	G	G	T
Template Predicted Secondary structure
Template SS confidence
	203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.

	208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	D	R	L	L	A	F	L	D	Q	E	M	S	D	S	L	S	Y	H	F	W	N	S	G	V	V	I	R	H	N	E	E	Y	E	K	I	E	G	C	D	D	G	V	I	M	H	L	K	S	G	K	K	L	K	A	D	C	L	L	Y	A	N	G	R	T	G	N	T	D	S	L	A	L	Q	N	I	G	L	E	T
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.
Template Sequence	E	R	G	E	L	A	P	R	D	I	V	A	R	A	I	D	H	E	M	K	R	L	G	A	D	C	M	F	L	.	.	.	.	.	.	.	.	.	D	I	S	H	K	P	A	D	F	I	R	Q	H	F	P	M	I	Y	E	K	L	L	G	L	G	I	D	L	T	Q	E	P	V	P	I	V	P	A	A	H	Y	T
Template Known Secondary structure	T	T	G	G	G	S																	T		S					.	.	.	.	.	.	.	.	.				S	S		S																T	T	T			T	T	T	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.
Template SS confidence
	283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.										.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

	288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.										.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.
Query Sequence	D	S	R	G	Q	L	K	V	N	S	M	Y	Q	T	A	Q	P	H	V	Y	A	V	G	D	V	I	G	Y	P	S	L	.	.	.	.	.	.	.	.	.	A	S	A	A	Y	D	Q	G	R	I	A	A	Q	A	L	V
Query Conservation																																.	.	.	.	.	.	.	.	.
Alig confidence	.	.																														.	.	.	.	.	.	.	.	.
Template Conservation	.	.
Template Sequence	.	.	C	G	G	V	M	V	D	D	H	G	R	T	D	V	E	G	L	Y	A	I	G	E	V	S	Y	T	G	L	H	G	A	N	R	M	A	S	N	S	L	L	E	C	L	V	Y	G	W	S	A	A	E	D	I	T
Template Known Secondary structure	.	.	S							T	T		B		S	S	B	T					G	G	G				S	S	S	T	T	S			T	T
Template Predicted Secondary structure	.	.
Template SS confidence
			354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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