Job Description P37639 Confidence 69.74% Date Thu Jan 5 11:56:11 GMT 2012 Rank 322 Aligned Residues 89 % Identity 20% Template c6paxA_ PDB info PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions Resolution 2.50 Å

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		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.			.										.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.
Predicted Secondary structure																																													.	.		.	.	.	.	.	.	.	.	.																						.
Query SS confidence																																													.	.		.	.	.	.	.	.	.	.	.																						.
Query Sequence		L	Q	P	N	M	R	T	R	V	C	T	V	I	N	N	N	I	A	H	E	W	T	L	A	R	I	A	S	E	L	L	M	S	P	S	L	L	K	K	K	L	R	E	.	.	E	.	.	.	.	.	.	.	.	.	E	T	S	Y	S	Q	L	L	T	E	C	R	M	Q	R	A	L	Q	L	I	V	.	I	H	G
Query Conservation																																													.	.		.	.	.	.	.	.	.	.	.																						.
Alig confidence																		.	.	.	.																								.	.		.	.	.	.	.	.	.	.	.																						.
Template Conservation																		.	.	.	.
Template Sequence		L	P	D	S	T	R	Q	R	I	V	E	L	A	H	S	G	.	.	.	.	A	R	P	C	D	I	S	R	I	L	Q	V	S	N	G	C	V	S	K	I	L	G	R	Y	Y	A	T	G	S	I	R	P	R	A	I	G	G	S	K	P	R	V	A	T	P	E	V	V	S	K	I	A	Q	Y	K	Q	E	C	P	S
Template Known Secondary structure																T	T	.	.	.	.											T																	S			S					S					S	S	S																T	T
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.					.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		207	.	.	210	.	.	.	.	.	.										.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.
Query Sequence		F	S	I	K	R	V	A	V	S	C	.	.	.	.	.	.	.	.	.	G	Y	H	S	V	S	Y	F	I	Y	V	F	R	N	Y
Query Conservation												.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	F	A	W	E	I	R	D	R	L	L	S	E	G	V	C	T	N	D	N	I	P	S	V	S	S	I	N	R	V	L	R	N	L
Template Known Secondary structure														T	T	S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions