Job Description P37639 Confidence 100.00% Date Thu Jan 5 11:56:11 GMT 2012 Rank 1 Aligned Residues 231 % Identity 18% Template c3gbgA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:tcp pilus virulence regulatory protein; PDBTitle: crystal structure of toxt from vibrio cholerae o395 Resolution 1.90 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		H	G	N	C	L	I	A	Y	A	R	H	K	Y	I	L	T	M	V	N	G	.	.	E	Y	R	Y	F	N	G	G	D	L	V	F	A	D	A	S	Q	I	R	V	D	K	C	V	E	N	F	V	F	V	S	R	D	T	L	S	L	F	L	P	M	L	K	E	E	A	L	N	L	H	A	H	K	K	V	S	S	L
Query Conservation																						.	.
Alig confidence																						.	.																																																	.
Template Conservation																																																																								.
Template Sequence		I	N	D	Y	K	M	F	W	I	D	S	G	I	A	K	L	I	D	K	N	C	L	V	S	Y	E	I	N	S	S	S	I	I	L	L	K	K	N	S	I	Q	R	F	S	L	T	S	L	S	D	E	N	I	N	V	S	V	I	T	I	S	D	S	F	I	R	S	L	K	S	.	Y	I	L	G	N	K	D	L	L
Template Known Secondary structure			S	S							S	S	S							T	T	T	T							T	T							T	T												S	S																				.
Template Predicted Secondary structure																																																																								.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	H	H	C	S	R	D	I	P	V	F	Q	E	V	A	Q	L	S	Q	N	K	N	L	R	Y	A	E	M	L	R	K	R	A	L	I	F	A	L	L	S	V	F	L	E	D	E	H	F	I	P	L	L	L	N	V	L	Q	P	N	M	R	T	R	V	C	T	V	I	N	N	N	I	A	H	E	W	T	L	A
Query Conservation
Alig confidence																												.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.
Template Sequence		L	W	N	C	E	H	N	D	I	A	V	L	S	E	V	V	N	G	F	R	E	I	N	Y	S	D	.	.	.	.	.	.	E	F	L	K	V	F	F	S	G	F	F	S	K	V	E	K	K	Y	N	S	I	F	I	T	D	D	L	D	A	M	E	K	I	S	C	L	V	K	S	D	I	T	R	N	W	R	W	A
Template Known Secondary structure							S	S										T	T	T	S	S						.	.	.	.	.	.															T	T	T	S	S	S		S	S			T	T													T	T	T	S
Template Predicted Secondary structure																												.	.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.							.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	A	S	E	L	L	M	S	P	S	L	L	K	K	K	L	R	E	E	E	T	S	Y	S	Q	L	L	T	E	C	R	M	Q	R	A	L	Q	L	I	V	I	H	G	F	S	I	K	R	V	A	V	S	C	G	Y	H	S	V	S	Y	F	I	Y	V	F	R	N	Y	Y	G	M	T	P	T	E	Y	Q	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	C	G	E	L	R	T	N	R	M	I	L	K	K	E	L	E	S	R	G	V	K	F	R	E	L	I	N	S	I	R	I	S	Y	S	I	S	L	M	K	T	G	E	F	K	I	K	Q	I	A	Y	Q	S	G	F	A	S	V	S	Y	F	S	T	V	F	K	S	T	M	N	V	A	P	S	E	Y	L	F	M
Template Known Secondary structure								T												T	T	T																						T											T	T		S														S	S
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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