Return to main results Retrieve Phyre Job Id

Job DescriptionP77626
Confidence99.71%DateThu Jan 5 12:31:16 GMT 2012
Rank5Aligned Residues68
% Identity29%Templatec2ewtA_
PDB info PDB header:dna binding proteinChain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of the dna-binding domain of bldd
Resolution1.81 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1. .......10.........20.........30. ........40.........50.........60........
Predicted Secondary structure 

.



..













Query SS confidence 

.




























. .




































Query Sequence  ME. NLARFLSTTLKQLRQQRGWSLSRLAEATG. . VSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFIS
Query Conservation 
 .     

 


 

   


   

   
..

 
 

 

 
   

   
  

 

 
    
  
Alig confidence 

.




























..




































Template Conservation 
       

  

  
   



  

   
  

   

  
 
   

   
  

  
 
    


Template Sequence  MSSEYAKQLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQELLP
Template Known Secondary structure 

TT

TTTSS
T
S


TS
GGGG

Template Predicted Secondary structure 


















Template SS confidence 






































































   1........10.........20.........30.........40.........50.........60.........70.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions