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Job DescriptionP0A9U8
Confidence100.00%DateThu Jan 5 11:11:26 GMT 2012
Rank31Aligned Residues361
% Identity22%Templatec3djlA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:protein aidb; PDBTitle: crystal structure of alkylation response protein e. coli aidb
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30......... 40.........50.........60.........70.
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Query Sequence  ASIRELITTNFPEEYFRTCDQNGTYP. . . . . . . . . . . . . . . . . . . . . . REFMRALADNGISMLGVPEEFGGIPADYVTQM
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Template Sequence  DFLASIGQQLGTAESLELGRLANVNPPELLRYDAQGRRLDDVRFHPAWHLLMQALCTNRVHNLAWEEDARSGA. . FVARA
Template Known Secondary structure  TSS


TTS


TTTTTGGGSTT

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   41........50.........60.........70.........80.........90.........100.........110... .....
 
   72.......80.........90.........100.........110....... ..120.........130........
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Query Sequence  LALMEVSKCGAPAFLITNGQCIHSMRRFGSAEQLRKTAESTLETGD. . . . . . . . . . . . . PAYALALTEPGAGSDNNSATT
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Template Sequence  ARFMLHAQVEAGSLCPITMTFAATPLLLQMLPAPFQDWTTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTT
Template Known Secondary structure 
STT

GGGGGGT
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GGGSSS



BTTBSS
GGG


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   119120.........130.........140.........150.........160.........170.........180.........190........
 
   139140...... ...150.........160.........170.........180.........190....... ..200.........210......
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Query Sequence  TYTRKNGK. VYINGQKTFITGAKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKINP. LHKIGWHMLSTCEVYLDNV
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Template Sequence  RAERLEDGSYRLVGHKWFFSVP. QSDAHLVLAQTAGGL. SCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDA
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TTS

T.TSSTT.SB
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   199200.........210.........220 .........230..... ....240.........250.........260.........270......
 
   217..220.........230.........240.........250.........260.........270.........280.........290......
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Query Sequence  EVEESDMVGEEGMGFLNVMYNFEMERLINAARSTGFAECAFEDAARYANQRIAFGKPIGHNQMIQEKLALMAIKIDNMRN
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Template Sequence  IGW. . . LLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTA
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   277.. 280.........290.........300.........310.........320.........330.........340.........350...
 
   297..300.........310.. .......320.........330.........340.........350.........360.........370
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Query Sequence  MVLKVAWQADQHQSLR. . . . . . TSAALAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIY
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Template Sequence  LLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCL
Template Known Secondary structure  TTTSGGGGGSTTSGGG
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   354.....360.........370.........380.........390.........400.........410.........420.........430...
 
   371........380.
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Query Sequence  VAGRQILKDYQ
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Template Sequence  DVLRVLNKQAG
Template Known Secondary structure 
TT
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   434.....440....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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