Job Description P0A9U8 Confidence 100.00% Date Thu Jan 5 11:11:26 GMT 2012 Rank 14 Aligned Residues 370 % Identity 30% Template c2vigC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:short-chain specific acyl-coa dehydrogenase,; PDBTitle: crystal structure of human short-chain acyl coa2 dehydrogenase Resolution 1.9 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	E	E	Q	E	L	L	L	A	S	I	R	E	L	I	T	T	N	F	P	E	E	Y	F	R	T	C	D	Q	N	G	T	Y	P	R	E	F	M	R	A	L	A	D	N	G	I	S	M	L	G	V	P	E	E	F	G	G	I	P	A	D	Y	V	T	Q	M	L	A	L	M	E	V	S	K	C	G	A	P	A
Query Conservation
Alig confidence																								.
Template Conservation																								.
Template Sequence		L	P	E	T	H	Q	M	L	L	Q	T	C	R	D	F	A	E	K	E	L	F	P	.	I	A	A	Q	V	D	K	E	H	L	F	P	A	A	Q	V	K	K	M	G	G	L	G	L	L	A	M	D	V	P	E	E	L	G	G	A	G	L	D	Y	L	A	Y	A	I	A	M	E	E	I	S	R	G	C	A	S	T
Template Known Secondary structure																					T	T	T	.	T								T														T	T	T	S	T	T	S		G	G	G	T	S
Template Predicted Secondary structure																								.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		85	.	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		F	L	I	T	N	G	Q	C	I	.	.	H	S	M	R	R	F	G	S	A	E	Q	L	R	K	T	A	E	S	T	L	E	T	G	D	P	A	Y	A	L	A	L	T	E	P	G	A	G	S	D	N	N	S	A	T	T	T	Y	T	R	K	N	G	K	V	Y	I	N	G	Q	K	T	F	I	T	G	A	K	E	Y
Query Conservation											.	.
Alig confidence											.	.
Template Conservation
Template Sequence		G	V	I	M	S	V	N	N	S	L	Y	L	G	P	I	L	K	F	G	S	K	E	Q	K	Q	A	W	V	T	P	F	T	S	G	D	K	I	G	C	F	A	L	S	E	P	G	N	G	S	D	A	G	A	A	S	T	T	A	R	A	E	G	D	S	W	V	L	N	G	T	K	A	W	I	T	N	A	W	E	A
Template Known Secondary structure											T	T																	T	G	G	G	S	S	S	S	S								B	T	T	B	S	S	S	G	G	G									T	T													T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		P	Y	M	L	V	L	A	R	D	P	Q	P	K	D	P	K	K	A	F	T	L	W	W	V	D	S	S	K	P	G	I	K	I	N	.	P	L	H	K	I	G	W	H	M	L	S	T	C	E	V	Y	L	D	N	V	E	V	E	E	S	D	M	V	G	E	E	G	M	G	F	L	N	V	M	Y	N	F	E	M	E
Query Conservation																																				.
Alig confidence												.	.	.	.	.	.	.																		.
Template Conservation												.	.	.	.	.	.	.
Template Sequence		S	A	A	V	V	F	A	S	T	D	.	.	.	.	.	.	.	S	I	S	A	F	L	V	P	M	P	T	P	G	L	T	L	G	K	K	E	D	K	L	G	I	R	G	S	S	T	A	N	L	I	F	E	D	C	R	I	P	K	D	S	I	L	G	E	P	G	M	G	F	K	I	A	M	Q	T	L	D	M	G
Template Known Secondary structure		S										.	.	.	.	.	.	.									S	S		T	T										S	S		T	T	S														G	G	G			S	S	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.								.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	I	N	A	A	R	S	T	G	F	A	E	C	A	F	E	D	A	A	R	Y	A	N	Q	R	I	A	F	G	K	P	I	G	H	N	Q	M	I	Q	E	K	L	A	L	M	A	I	K	I	D	N	M	R	N	M	V	L	K	V	A	W	Q	A	D	Q	H	Q	S	L	R	T	S	A	A	L	A	K	L	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	G	I	A	S	Q	A	L	G	I	A	Q	T	A	L	D	C	A	V	N	Y	A	E	N	R	M	A	F	G	A	P	L	T	K	L	Q	V	I	Q	F	K	L	A	D	M	A	L	A	L	E	S	A	R	L	L	T	W	R	A	A	M	L	K	D	N	K	K	P	F	I	K	E	A	A	M	A	K	L	A
Template Known Secondary structure																														T	T			G	G	G	S																														T	T
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	A	R	T	A	M	E	V	I	D	D	A	I	Q	I	M	G	G	L	G	Y	T	D	E	A	R	V	S	R	F	W	R	D	V	R	C	E	R	I	G	G	G	T	D	E	I	M	I	Y	V	A	G	R	Q	I	L	K	D	Y	Q	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	E	A	A	T	A	I	S	H	Q	A	I	Q	I	L	G	G	M	G	Y	V	T	E	M	P	A	E	R	H	Y	R	D	A	R	I	T	E	I	Y	E	G	T	S	E	I	Q	R	L	V	I	A	G	H	L	L	R	S	Y	R	S
Template Known Secondary structure																		G	G	G	G	G	S	T	T	S	S									G	G	G	G	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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