Job Description P0A9U8 Confidence 100.00% Date Thu Jan 5 11:11:26 GMT 2012 Rank 13 Aligned Residues 379 % Identity 28% Template c2uxwA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:very-long-chain specific acyl-coa dehydrogenase; PDBTitle: crystal structure of human very long chain acyl-coa2 dehydrogenase (acadvl) Resolution 1.45 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		S	L	T	E	E	Q	E	L	L	L	A	S	I	R	E	L	I	T	T	N	F	P	E	E	Y	.	F	R	T	C	D	Q	N	G	T	Y	P	R	E	F	M	R	A	L	A	D	N	G	I	S	M	L	G	V	P	E	E	F	G	G	I	P	A	D	Y	V	T	Q	M	L	A	L	M	E	V	S	K	C	G	A
Query Conservation																											.
Alig confidence																											.
Template Conservation
Template Sequence		V	L	N	E	E	Q	T	Q	F	L	K	E	L	V	E	P	V	S	R	F	F	E	E	V	N	D	P	A	K	N	D	A	L	E	M	V	E	E	T	T	W	Q	G	L	K	E	L	G	A	F	G	L	Q	V	P	S	E	L	G	G	V	G	L	C	N	T	Q	Y	A	R	L	V	E	I	V	G	M	H	D	L
Template Known Secondary structure																									T										T	S												T	T	T	T		T	T	S		G	G	G	T	S
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		83	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.																																																							.	.
Query SS confidence												.	.																																																							.	.
Query Sequence		P	A	F	L	I	T	N	G	Q	C	.	.	I	H	S	M	R	R	F	G	S	A	E	Q	L	R	K	T	A	E	S	T	L	E	T	G	D	P	A	Y	A	L	A	L	T	E	P	G	A	G	S	D	N	N	S	A	T	T	T	Y	T	R	K	N	G	K	.	.	V	Y	I	N	G	Q	K	T	F	I	T	G
Query Conservation												.	.																																																							.	.
Alig confidence												.	.																																																							.	.
Template Conservation
Template Sequence		G	V	G	I	T	L	G	A	H	Q	S	I	G	F	K	G	I	L	L	F	G	T	K	A	Q	K	E	K	Y	L	P	K	L	A	S	G	E	T	V	A	A	F	C	L	T	E	P	S	S	G	S	D	A	A	S	I	R	T	S	A	V	P	S	P	C	G	K	Y	Y	T	L	N	G	S	K	L	W	I	S	N
Template Known Secondary structure												T	T	T	T																					T	T	S	S								B	T	T	B	S	S		G	G	G									T	T	S	S													T
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.					.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																						.	.	.	.																				.
Query SS confidence																						.	.	.	.																				.
Query Sequence		A	K	E	Y	P	Y	M	L	V	L	A	R	D	P	Q	P	K	D	P	K	.	.	.	.	K	A	F	T	L	W	W	V	D	S	S	K	P	G	I	K	I	N	P	.	L	H	K	I	G	W	H	M	L	S	T	C	E	V	Y	L	D	N	V	E	V	E	E	S	D	M	V	G	E	E	G	M	G	F	L	N
Query Conservation																						.	.	.	.																				.
Alig confidence																						.	.	.	.																				.
Template Conservation
Template Sequence		G	G	L	A	D	I	F	T	V	F	A	K	T	P	V	T	D	P	A	T	G	A	V	K	E	K	I	T	A	F	V	V	E	R	G	F	G	G	I	T	H	G	P	P	E	K	K	M	G	I	K	A	S	N	T	A	E	V	F	F	D	G	V	R	V	P	S	E	N	V	L	G	E	V	G	S	G	F	K	V
Template Known Secondary structure		T	T	T		S													T	T	T														G	G	G	S	S										S	S		T	T	S														G	G	G			S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		V	M	Y	N	F	E	M	E	R	L	I	N	A	A	R	S	T	G	F	A	E	C	A	F	E	D	A	A	R	Y	A	N	Q	R	I	A	F	G	K	P	I	G	H	N	Q	M	I	Q	E	K	L	A	L	M	A	I	K	I	D	N	M	R	N	M	V	L	K	V	A	W	Q	A	D	Q	H	Q	S	L	.	R
Query Conservation																																																																																.
Alig confidence																																																																																.
Template Conservation
Template Sequence		A	M	H	I	L	N	N	G	R	F	G	M	A	A	A	L	A	G	T	M	R	G	I	I	A	K	A	V	D	H	A	T	N	R	T	Q	F	G	E	K	I	H	N	F	G	L	I	Q	E	K	L	A	R	M	V	M	L	Q	Y	V	T	E	S	M	A	Y	M	V	S	A	N	M	D	Q	G	A	T	D	F	Q
Template Known Secondary structure																																						T	T			G	G	G	S																														T	T		S
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	A	A	L	A	K	L	Y	C	A	R	T	A	M	E	V	I	D	D	A	I	Q	I	M	G	G	L	G	Y	T	D	E	A	R	V	S	R	F	W	R	D	V	R	C	E	R	I	G	G	G	T	D	E	I	M	I	Y	V	A	G	R	Q	I	L	K	D	Y	Q	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E	A	A	I	S	K	I	F	G	S	E	A	A	W	K	V	T	D	E	C	I	Q	I	M	G	G	M	G	F	M	K	E	P	G	V	E	R	V	L	R	D	L	R	I	F	R	I	F	E	G	T	N	D	I	L	R	L	F	V	A	L	Q	G	C	M	D	K	G	K
Template Known Secondary structure																											T					S	S	T	T	S									G	G	G	G	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions