Phyre 2 alignment of P0A9U8 with c2rehD

Job Description P0A9U8
Confidence 100.00% Date Thu Jan 5 11:11:26 GMT 2012

Rank 27 Aligned Residues 377

% Identity 20% Template c2rehD_

PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:nitroalkane oxidase; PDBTitle: mechanistic and structural analyses of the roles of arg4092 and asp402 in the reaction of the flavoprotein nitroalkane3 oxidase

Resolution 2.40 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.							.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.
Query Sequence	M	D	F	S	L	T	E	E	Q	E	L	L	L	A	S	I	R	E	L	I	T	T	N	F	P	E	E	Y	F	R	T	C	D	Q	N	G	.	.	.	.	.	.	T	Y	P	R	E	F	M	R	A	L	A	D	N	G	I	S	M	L	G	V	P	E	E	F	G	G	I	P	A	D	Y	V	T	Q	M	L	A	L
Query Conservation																																					.	.	.	.	.	.
Alig confidence																											.										.	.	.	.	.	.
Template Conservation																											.
Template Sequence	V	D	F	K	L	S	P	S	Q	L	E	A	R	R	H	A	Q	A	F	A	N	T	V	L	T	K	.	A	S	A	E	Y	S	T	Q	K	D	Q	L	S	R	F	Q	A	T	R	P	F	Y	R	E	A	V	R	H	G	L	I	K	A	Q	V	P	I	P	L	G	G	T	M	E	S	L	V	H	E	S	I	I	L
Template Known Secondary structure																							T	G	G	G	.						T	T			S								T										T	T	T	T	G	G	G	S	B	G	G	G	T			B
Template Predicted Secondary structure																											.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

	75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.						.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																							.																				.	.																					.	.	.	.	.
Query SS confidence																							.																				.	.																					.	.	.	.	.
Query Sequence	M	E	V	S	K	C	G	A	P	A	F	L	I	T	N	G	Q	C	I	H	S	M	.	R	R	F	G	S	A	E	Q	L	R	K	T	A	E	S	T	L	E	T	.	.	G	D	P	A	Y	A	L	A	L	T	E	P	G	A	G	S	D	N	N	S	.	.	.	.	.	A	T	T	T	Y	T	R	K	N	G	K
Query Conservation																							.																				.	.																					.	.	.	.	.
Alig confidence																							.																				.	.																					.	.	.	.	.
Template Conservation
Template Sequence	E	E	L	F	A	V	E	P	A	T	S	I	T	I	V	A	T	A	L	G	L	M	P	V	I	L	C	D	S	P	S	L	Q	E	K	F	L	K	P	F	I	S	G	E	G	E	P	L	A	S	L	M	H	S	E	P	N	G	T	A	N	W	L	Q	K	G	G	P	G	L	Q	T	T	A	R	K	V	G	N	E
Template Known Secondary structure					T	T			T	T																	S	S										G	G	G	S	S	S		S											T	T		S	T	T	T	T		T	T	S				S							T	T
Template Predicted Secondary structure
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

	147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.						.	.	.	.	.	.	.	170	.	.	.	.									.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.								.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.													.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.													.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Query Sequence	V	Y	I	N	G	Q	K	T	F	I	T	G	A	K	E	Y	.	.	.	.	.	P	Y	M	L	V	L	A	R	D	P	Q	P	.	.	.	.	.	.	.	.	K	D	P	K	K	A	F	T	L	W	W	V	D	S	S	K	P	G	I	K	I	N	.	.	.	.	.	.	.	P	L	H	K	I	G	W	H	M	L
Query Conservation																	.	.	.	.	.													.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.													.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template Conservation
Template Sequence	W	V	I	S	G	E	K	L	W	P	S	N	S	G	G	W	D	Y	K	G	A	D	L	A	C	V	V	C	R	V	S	D	D	P	S	K	P	Q	D	P	N	V	D	P	A	T	Q	I	A	V	L	L	V	T	R	E	T	I	A	N	N	K	K	D	A	Y	Q	I	L	G	E	P	E	L	A	G	H	I	T	T
Template Known Secondary structure											T	T	T	T	T	T	T	T	S			S										S	S	T	T	S				T	T	S		G	G	G	G													T	S		G	G	G										S	S		T	T
Template Predicted Secondary structure
Template SS confidence
	161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

	207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																											.																																								.
Query SS confidence																											.																																								.
Query Sequence	S	T	C	E	V	Y	L	D	N	V	E	V	E	E	S	D	M	V	G	E	E	G	M	G	F	L	.	N	V	M	Y	N	F	E	M	E	R	L	I	N	A	A	R	S	T	G	F	A	E	C	A	F	E	D	A	A	R	Y	A	N	Q	R	I	A	F	G	.	K	P	I	G	H	N	Q	M	I	Q	E	K	L
Query Conservation																											.																																								.
Alig confidence																											.																																								.
Template Conservation
Template Sequence	S	G	P	H	T	R	F	T	E	F	H	V	P	H	E	N	L	L	C	T	P	G	L	K	A	Q	G	L	V	E	T	A	F	A	M	S	A	A	L	V	G	A	M	A	I	G	T	A	R	A	A	F	E	E	A	L	V	F	A	K	S	D	T	R	G	G	S	K	H	I	I	E	H	Q	S	V	A	D	K	L
Template Known Secondary structure														G	G	G	B		S		T	T																																										T	T	S	S	S		G	G	G	S
Template Predicted Secondary structure
Template SS confidence
	241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

	285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.					.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																													.	.	.	.
Query SS confidence																													.	.	.	.
Query Sequence	A	L	M	A	I	K	I	D	N	M	R	N	M	V	L	K	V	A	W	Q	A	D	Q	H	Q	S	L	R	.	.	.	.	T	S	A	A	L	A	K	L	Y	C	A	R	T	A	M	E	V	I	D	D	A	I	Q	I	M	G	G	L	G	Y	T	D	E	A	R	V	S	R	F	W	R	D	V	R	C	E	R	I
Query Conservation																													.	.	.	.
Alig confidence																													.	.	.	.
Template Conservation
Template Sequence	I	D	C	K	I	R	L	E	T	S	R	L	L	V	W	K	A	V	T	T	L	E	D	E	A	L	E	W	K	V	K	L	E	M	A	M	Q	T	K	I	Y	T	T	D	V	A	V	E	C	V	I	D	A	M	K	A	V	G	M	K	S	Y	A	K	D	M	S	F	P	R	L	L	N	E	V	M	C	Y	P	L
Template Known Secondary structure																						T		T	T	S																																	G	G	G	G	S	T	T	S	S									T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
	321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400

	361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	G	G	T	D	E	I	M	I	Y	V	A	G	R	Q	I	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence	F	E	G	G	N	I	G	L	R	R	R	Q	M	Q	R	V	M	A
Template Known Secondary structure	S	S	S		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
	401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions