Job Description P0A9U8 Confidence 100.00% Date Thu Jan 5 11:11:26 GMT 2012 Rank 11 Aligned Residues 375 % Identity 25% Template c2jifA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:short/branched chain specific acyl-coa dehydrogenase; PDBTitle: structure of human short-branched chain acyl-coa2 dehydrogenase (acadsb) Resolution 2.0 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	T	E	E	Q	E	L	L	L	A	S	I	R	E	L	I	T	T	N	F	P	E	E	Y	F	R	T	C	D	Q	N	G	T	Y	P	R	E	F	M	R	A	L	A	D	N	G	I	S	M	L	G	V	P	E	E	F	G	G	I	P	A	D	Y	V	T	Q	M	L	A	L	M	E	V	S	K	C	G	A	P
Query Conservation
Alig confidence																									.
Template Conservation																									.
Template Sequence		T	F	T	D	E	E	M	M	I	K	S	S	V	K	K	F	A	Q	E	Q	I	A	P	.	L	V	S	T	M	D	E	N	S	K	M	E	K	S	V	I	Q	G	L	F	Q	Q	G	L	M	G	I	E	V	D	P	E	Y	G	G	T	G	A	S	F	L	S	T	V	L	V	I	E	E	L	A	K	V	D	A	S
Template Known Secondary structure																						T	G	G	.	G								T													T	T	T	T	S	S	S	S		G	G	G	T																		T	T
Template Predicted Secondary structure																									.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		A	F	L	I	T	N	G	Q	C	I	H	S	M	.	R	R	F	G	S	A	E	Q	L	R	K	T	A	E	S	T	L	E	T	G	D	P	A	Y	A	L	A	L	T	E	P	G	A	G	S	D	N	N	S	A	T	T	T	Y	T	R	K	N	G	K	V	Y	I	N	G	Q	K	T	F	I	T	G	A	K	E	Y
Query Conservation															.
Alig confidence															.
Template Conservation
Template Sequence		V	A	V	F	C	E	I	Q	N	T	L	I	N	T	L	I	R	K	H	G	T	E	E	Q	K	A	T	Y	L	P	Q	L	T	T	E	K	V	G	S	F	C	L	S	E	A	G	A	G	S	D	S	F	A	L	K	T	R	A	D	K	E	G	D	Y	Y	V	L	N	G	S	K	M	W	I	S	S	A	E	H	A
Template Known Secondary structure												T																								T									B	T	T	B	S	S	S	G	G	G									T	T													T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		P	Y	M	L	V	L	A	R	D	P	Q	P	K	D	P	K	K	A	F	T	L	W	W	V	D	S	S	K	P	G	I	K	I	N	.	P	L	H	K	I	G	W	H	M	L	S	T	C	E	V	Y	L	D	N	V	E	V	E	E	S	D	M	V	G	E	E	G	M	G	F	L	N	V	M	Y	N	F	E	M	E
Query Conservation																																				.
Alig confidence															.																					.
Template Conservation															.
Template Sequence		G	L	F	L	V	M	A	N	V	D	P	T	I	.	G	Y	K	G	I	T	S	F	L	V	D	R	D	T	P	G	L	H	I	G	K	P	E	N	K	L	G	L	R	A	S	S	T	C	P	L	T	F	E	N	V	K	V	P	E	A	N	I	L	G	Q	I	G	H	G	Y	K	Y	A	I	G	S	L	N	E	G
Template Known Secondary structure		S								S		G	G	G	.	G	G	G	G								T	T		T	T										S	S		T	T	S														G	G	G			S	S	T	T
Template Predicted Secondary structure															.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	I	N	A	A	R	S	T	G	F	A	E	C	A	F	E	D	A	A	R	Y	A	N	Q	R	I	A	F	G	K	P	I	G	H	N	Q	M	I	Q	E	K	L	A	L	M	A	I	K	I	D	N	M	R	N	M	V	L	K	V	A	W	Q	A	D	Q	H	Q	S	L	R	T	S	A	A	L	A	K	L	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	G	I	A	A	Q	M	L	G	L	A	Q	G	C	F	D	Y	T	I	P	Y	I	K	E	R	I	Q	F	G	K	R	L	F	D	F	Q	G	L	Q	H	Q	V	A	H	V	A	T	Q	L	E	A	A	R	L	L	T	Y	N	A	A	R	L	L	E	A	G	K	P	F	I	K	E	A	S	M	A	K	Y	Y
Template Known Secondary structure																														T	T			G	G	G	S																														T	T
Template Predicted Secondary structure
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		C	A	R	T	A	M	E	V	I	D	D	A	I	Q	I	M	G	G	L	G	Y	T	D	E	A	R	V	S	R	F	W	R	D	V	R	C	E	R	I	G	G	G	T	D	E	I	M	I	Y	V	A	G	R	Q	I	L	K	D	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	E	I	A	G	Q	T	T	S	K	C	I	E	W	M	G	G	V	G	Y	T	K	D	Y	P	V	E	K	Y	F	R	D	A	K	I	G	T	I	Y	E	G	A	S	N	I	Q	L	N	T	I	A	K	H	I	D	A	E	Y
Template Known Secondary structure																		G	G	G	G	G	S	T	T	S	S									G	G	G	G	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions