Job Description P0A9U8 Confidence 100.00% Date Thu Jan 5 11:11:26 GMT 2012 Rank 35 Aligned Residues 368 % Identity 17% Template c2ddhA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:acyl-coa oxidase; PDBTitle: crystal structure of acyl-coa oxidase complexed with 3-oh-dodecanoate Resolution 2.07 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	E	Q	E	L	L	L	A	S	I	R	E	L	I	T	T	N	F	P	E	E	Y	F	R	T	C	D	Q	N	G	T	Y	P	R	E	F	M	R	A	L	A	D	N	G	I	S	M	L	G	V	P	E	E	F	G	G	I	P	A	D	Y	V	T	Q	M	L	A	L	M	E	V	S	K	C	G	A	P	A	F
Query Conservation
Alig confidence																				.	.	.																																							.	.	.	.	.
Template Conservation																				.	.	.																																							.	.	.	.	.
Template Sequence		S	P	E	N	T	R	R	R	R	E	I	E	N	L	I	L	N	D	.	.	.	P	D	F	Q	H	E	D	Y	N	F	L	T	R	S	Q	R	Y	E	V	A	V	K	K	S	A	T	M	V	K	K	M	R	E	Y	G	I	S	D	.	.	.	.	.	P	E	E	I	M	W	F	K	N	S	V	H	R	G	H	P
Template Known Secondary structure		S																T		.	.	.	G	G	G			S		G	G	G	S																							T	T				.	.	.	.	.													T	T
Template Predicted Secondary structure																				.	.	.																																							.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.						.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150						.	.	.	.	.	.	.
Predicted Secondary structure													.																																															.	.									.	.	.	.	.
Query SS confidence													.																																															.	.									.	.	.	.	.
Query Sequence		L	I	T	N	G	Q	C	I	H	S	M	.	R	R	F	G	S	A	E	Q	L	R	K	T	A	E	S	T	L	E	T	G	D	P	A	Y	A	L	A	L	T	E	P	G	A	G	S	D	N	N	S	A	T	T	T	Y	T	R	.	.	K	N	G	K	V	Y	I	N	.	.	.	.	.	G	Q	K	T	F	I	T
Query Conservation													.																																															.	.									.	.	.	.	.
Alig confidence													.																																															.	.									.	.	.	.	.
Template Conservation
Template Sequence		E	P	L	D	L	H	L	G	M	F	L	P	T	L	L	Q	A	T	A	E	Q	Q	E	R	F	F	M	P	A	W	N	L	E	I	T	G	T	Y	A	Q	T	E	M	G	H	G	T	H	L	R	G	L	E	T	T	A	T	Y	D	P	K	T	Q	E	F	I	L	N	S	P	T	V	T	S	I	K	W	W	P	G
Template Known Secondary structure			T	T						T																						T	T	S	S								B	T	T	B	S	S		G	G	G									T	T	T	T								S	S	T	T	S					T
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		158		.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.								.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.				.
Predicted Secondary structure			.																														.	.	.	.	.	.	.											.																												.	.	.
Query SS confidence			.																														.	.	.	.	.	.	.											.																												.	.	.
Query Sequence		G	.	A	K	E	Y	P	Y	M	L	V	L	A	R	D	P	Q	P	K	D	P	K	K	A	F	T	L	W	W	V	D	.	.	.	.	.	.	.	S	S	K	P	G	I	K	I	N	P	.	L	H	K	I	G	W	H	M	L	S	T	C	E	V	Y	L	D	N	V	E	V	E	E	S	D	M	V	.	.	.	G
Query Conservation			.																														.	.	.	.	.	.	.											.																												.	.	.
Alig confidence			.															.															.	.	.	.	.	.	.											.																												.	.	.
Template Conservation																		.
Template Sequence		G	L	G	K	T	S	N	H	A	I	V	L	A	Q	L	I	.	T	Q	G	E	C	Y	G	L	H	A	F	V	V	P	I	R	E	I	G	T	H	K	P	L	P	G	I	T	V	G	D	I	G	P	K	F	G	Y	E	E	M	D	N	G	Y	L	K	M	D	N	Y	R	I	P	R	E	N	M	L	M	K	Y	A
Template Known Secondary structure		T	T	T	T	T		S										.		T	T													B		T	T	T			B		T	T										S	S		T	T									S	S					G	G	G	B			S	S
Template Predicted Secondary structure																		.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.								.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.
Query Sequence		E	E	G	M	G	F	L	N	V	M	Y	N	F	E	M	E	R	L	I	N	A	A	R	S	T	G	F	A	E	C	A	F	E	D	A	A	R	Y	A	N	Q	R	I	A	F	G	K	.	.	.	.	.	.	.	P	I	G	H	N	Q	M	I	Q	E	K	L	A	L	M	A	I	K	I	D	N	M	R	N	M	V
Query Conservation																																																	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	V	K	P	D	G	T	Y	V	K	P	L	M	V	F	V	R	S	F	L	V	G	N	A	A	Q	S	L	S	K	A	C	T	I	A	I	R	Y	S	A	V	R	R	Q	S	E	I	K	Q	S	E	P	E	P	Q	I	L	D	F	Q	T	Q	Q	Y	K	L	F	P	L	L	A	T	A	Y	A	F	H	F	V	G
Template Known Secondary structure					T	T																																						B		S		S	S	T	T	S				B	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.			310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		L	K	V	A	W	Q	A	D	Q	H	Q	.	.	S	L	R	T	S	A	A	L	A	K	L	Y	C	A	R	T	A	M	E	V	I	D	D	A	I	Q	I	M	G	G	L	G	Y	T	D	E	A	R	V	S	R	F	W	R	D	V	R	C	E	R	I	G	G	G	T	D	E	I	M	I	Y	V	A	G	R	Q	I
Query Conservation													.	.
Alig confidence													.	.
Template Conservation
Template Sequence		R	Y	M	K	E	T	Y	L	R	S	E	L	P	E	L	H	A	L	T	A	G	L	K	A	F	T	T	W	T	A	N	A	G	I	E	E	C	R	M	A	C	G	G	H	G	Y	S	H	S	S	G	I	P	N	I	Y	V	T	F	T	P	A	C	T	F	E	G	E	N	T	V	M	M	L	Q	T	A	R	F	L
Template Known Secondary structure																																										T	T					S	G	G	G	S									G	G	G	G	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
		377	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	D	Y	Q	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	K	I	Y	D	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		436	.	.	.	440	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions