Job Description P0A9U8 Confidence 99.97% Date Thu Jan 5 11:11:26 GMT 2012 Rank 54 Aligned Residues 298 % Identity 14% Template c1u8vA_ PDB info PDB header:lyase, isomerase Chain: A: PDB Molecule:gamma-aminobutyrate metabolism PDBTitle: crystal structure of 4-hydroxybutyryl-coa dehydratase from2 clostridium aminobutyricum: radical catalysis involving a3 [4fe-4s] cluster and flavin Resolution 1.60 Å

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		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130									.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																.	.																									.	.	.	.	.	.	.	.
Query SS confidence																																.	.																									.	.	.	.	.	.	.	.
Query Sequence		V	S	K	C	G	A	P	A	F	L	I	T	N	G	Q	C	I	H	S	M	R	R	F	G	S	A	E	Q	L	R	.	.	K	T	A	E	S	T	L	E	T	G	D	P	A	Y	A	L	A	L	T	E	P	G	A	G	.	.	.	.	.	.	.	.	S	D	N	N	S	A	T	T	T	Y	T	R	K	N	G	K
Query Conservation																																.	.																									.	.	.	.	.	.	.	.
Alig confidence																																.	.																									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	Q	R	C	V	G	M	D	A	F	N	A	V	F	S	T	T	Y	E	I	D	Q	K	Y	G	T	N	Y	H	K	N	F	T	E	Y	L	K	Y	I	Q	E	N	D	L	I	V	D	G	A	M	T	D	P	K	G	D	R	G	L	A	P	S	A	Q	K	D	P	D	L	F	L	R	I	V	E	K	R	E	D	G
Template Known Secondary structure				T																																								T												S		T	T	S		G	G	G		S	S	T	T	S	S								S	S
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.																.	210
Predicted Secondary structure																																																		.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	Y	I	N	G	Q	K	T	F	I	T	G	A	K	E	Y	P	Y	M	L	V	L	A	R	D	P	Q	P	K	D	P	K	K	A	F	T	L	W	W	V	D	S	S	K	P	G	I	K	.	I	N	P	L	H	K	I	G	W	H	M	L	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	E
Query Conservation																																																		.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	V	V	R	G	A	K	A	H	Q	T	G	S	I	N	S	H	E	H	I	I	M	P	T	I	A	M	T	E	A	D	K	D	Y	A	V	S	F	A	C	P	S	D	A	D	G	L	F	M	I	Y	G	R	Q	S	C	D	T	R	K	M	E	E	G	A	D	I	D	L	G	N	K	Q	F	G	G	Q	E	A	L
Template Known Secondary structure										S		T	T		T	T		S							S	S				G	G	G	G	G	G								T	T		T	T									T	T	G	G	G	G	G	S	T	T			G	G	G	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		V	Y	L	D	N	V	E	V	E	E	S	D	M	.	.	V	G	E	E	G	M	G	F	L	N	V	M	Y	N	F	E	M	E	R	L	I	N	A	A	R	S	T	G	F	A	E	C	A	F	E	D	A	A	R	Y	A	N	Q	R	I	A	F	G	K	P	I	G	H	N	Q	M	I	Q	E	K	L	A	L	M	A
Query Conservation															.	.
Alig confidence															.	.																																											.	.	.	.	.
Template Conservation																																																											.	.	.	.	.
Template Sequence		V	V	F	D	N	V	F	I	P	N	D	R	I	F	L	C	Q	E	Y	D	F	A	G	M	M	V	E	R	F	A	G	Y	H	R	Q	S	Y	G	G	C	K	V	G	V	G	D	V	V	I	G	A	A	A	L	A	A	D	.	.	.	.	.	Y	N	G	A	Q	K	A	S	H	V	K	D	K	L	I	E	M	T
Template Known Secondary structure											G	G	G					S		G	G	G																																					.	.	.	.	.			T		T	T
Template Predicted Secondary structure																																																											.	.	.	.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.						.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.						310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.																.
Predicted Secondary structure																							.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	K	I	D	N	M	R	N	M	V	L	K	V	A	W	Q	A	D	Q	H	Q	.	.	.	.	.	S	L	R	T	S	A	A	L	A	K	L	Y	C	A	R	T	A	M	E	V	I	D	D	A	I	Q	I	M	G	G	L	G	Y	T	D	E	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V
Query Conservation																							.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	L	N	E	T	L	Y	C	C	G	I	A	C	S	A	E	G	Y	P	T	A	A	G	N	Y	Q	I	D	L	L	L	A	N	V	C	K	Q	N	I	T	R	F	P	Y	E	I	V	R	L	A	E	D	I	A	G	G	L	M	V	T	M	P	S	E	A	D	F	K	S	E	T	V	V	G	R	D	G	E	T	I
Template Known Secondary structure																	T					T	T	S																	T	T															T												T				B		S	T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
		349	350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		S	R	F	W	R	D	V	R	C	E	R	.	I	G	G	G	T	D	E	I	M	I	Y	V	A	G	R	Q	I	L	K	D
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		G	D	F	C	N	K	F	F	A	A	A	P	T	C	T	T	E	E	R	M	R	V	L	R	F	L	E	N	I	C	L	G
Template Known Secondary structure									T			S	T	T	S																	T	S
Template Predicted Secondary structure
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions