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Job DescriptionP0A9U8
Confidence100.00%DateThu Jan 5 11:11:26 GMT 2012
Rank2Aligned Residues381
% Identity28%Templatec1egcB_
PDB info PDB header:electron transferChain: B: PDB Molecule:medium chain acyl-coa dehydrogenase; PDBTitle: structure of t255e, e376g mutant of human medium chain acyl-2 coa dehydrogenase complexed with octanoyl-coa
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MDFSLTEEQELLLASIRELITTNFPEEYFRTCDQNGTYPREFMRALADNGISMLGVPEEFGGIPADYVTQMLALMEVSKC
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Template Sequence  FSFEFTEQQKEFQATARKFAREEI. IPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAYG
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T.



TT
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TT
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   12.......20.........30..... ....40.........50.........60.........70.........80.........90
 
   81........90..... ....100.........110.........120.........130.........140.........150.........
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Query Sequence  GAPAFLITNGQCIHS. MRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYINGQKTFITGA
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Template Sequence  CTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNG
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BTTBSSSGGG


TTTT
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   91........100.........110.........120.........130.........140.........150.........160.........170
 
   160.........170...... ...180.........190...... ...200.........210.........220.........230......
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Query Sequence  KEYPYMLVLARDPQPKD. . PKKAFTLWWVDSSKPGIKIN. PLHKIGWHMLSTCEVYLDNVEVEESDMVGEEGMGFLNVMY
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Template Sequence  GKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMG
Template Known Secondary structure  TT



TT

GGGTTT
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   171........180.........190.........200.........210.........220.........230.........240.........250
 
   237..240.........250.........260.........270.........280.........290.........300.........310......
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Query Sequence  NFEMERLINAARSTGFAECAFEDAARYANQRIAFGKPIGHNQMIQEKLALMAIKIDNMRNMVLKVAWQADQHQSLRTSAA
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Template Sequence  AFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYAS
Template Known Secondary structure  TT
B
SSSBGGGSTT


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   251........260.........270.........280.........290.........300.........310.........320.........330
 
   317..320.........330.........340.........350.........360.........370.........380..
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Query Sequence  LAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILKDYQN
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Template Sequence  IAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDKYKN
Template Known Secondary structure  TTSTTSSGGGGTSSS


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   331........340.........350.........360.........370.........380.........390......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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