Job Description P0A9U8 Confidence 100.00% Date Thu Jan 5 11:11:26 GMT 2012 Rank 2 Aligned Residues 381 % Identity 28% Template c1egcB_ PDB info PDB header:electron transfer Chain: B: PDB Molecule:medium chain acyl-coa dehydrogenase; PDBTitle: structure of t255e, e376g mutant of human medium chain acyl-2 coa dehydrogenase complexed with octanoyl-coa Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	F	S	L	T	E	E	Q	E	L	L	L	A	S	I	R	E	L	I	T	T	N	F	P	E	E	Y	F	R	T	C	D	Q	N	G	T	Y	P	R	E	F	M	R	A	L	A	D	N	G	I	S	M	L	G	V	P	E	E	F	G	G	I	P	A	D	Y	V	T	Q	M	L	A	L	M	E	V	S	K	C
Query Conservation
Alig confidence																										.
Template Conservation																										.
Template Sequence		F	S	F	E	F	T	E	Q	Q	K	E	F	Q	A	T	A	R	K	F	A	R	E	E	I	.	I	P	V	A	A	E	Y	D	K	T	G	E	Y	P	V	P	L	I	R	R	A	W	E	L	G	L	M	N	T	H	I	P	E	N	C	G	G	L	G	L	G	T	F	D	A	C	L	I	S	E	E	L	A	Y	G
Template Known Secondary structure																									T	.																								T	T		S	S	T	T	S		G	G	G	T	S																	T	T
Template Predicted Secondary structure																										.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		G	A	P	A	F	L	I	T	N	G	Q	C	I	H	S	.	M	R	R	F	G	S	A	E	Q	L	R	K	T	A	E	S	T	L	E	T	G	D	P	A	Y	A	L	A	L	T	E	P	G	A	G	S	D	N	N	S	A	T	T	T	Y	T	R	K	N	G	K	V	Y	I	N	G	Q	K	T	F	I	T	G	A
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		C	T	G	V	Q	T	A	I	E	G	N	S	L	G	Q	M	P	I	I	I	A	G	N	D	Q	Q	K	K	K	Y	L	G	R	M	T	E	E	P	L	M	C	A	Y	C	V	T	E	P	G	A	G	S	D	V	A	G	I	K	T	K	A	E	K	K	G	D	E	Y	I	I	N	G	Q	K	M	W	I	T	N	G
Template Known Secondary structure																																						S										B	T	T	B	S	S	S	G	G	G									T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																			.	.																					.
Query SS confidence																			.	.																					.
Query Sequence		K	E	Y	P	Y	M	L	V	L	A	R	D	P	Q	P	K	D	.	.	P	K	K	A	F	T	L	W	W	V	D	S	S	K	P	G	I	K	I	N	.	P	L	H	K	I	G	W	H	M	L	S	T	C	E	V	Y	L	D	N	V	E	V	E	E	S	D	M	V	G	E	E	G	M	G	F	L	N	V	M	Y
Query Conservation																			.	.																					.
Alig confidence																			.	.																					.
Template Conservation
Template Sequence		G	K	A	N	W	Y	F	L	L	A	R	S	D	P	D	P	K	A	P	A	N	K	A	F	T	G	F	I	V	E	A	D	T	P	G	I	Q	I	G	R	K	E	L	N	M	G	Q	R	C	S	D	T	R	G	I	V	F	E	D	V	K	V	P	K	E	N	V	L	I	G	D	G	A	G	F	K	V	A	M	G
Template Known Secondary structure		T	T														T	T			G	G	G	T								T	T		T	T										S	S		T	T	S														G	G	G	B	S	S	S	T	T	B
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	F	E	M	E	R	L	I	N	A	A	R	S	T	G	F	A	E	C	A	F	E	D	A	A	R	Y	A	N	Q	R	I	A	F	G	K	P	I	G	H	N	Q	M	I	Q	E	K	L	A	L	M	A	I	K	I	D	N	M	R	N	M	V	L	K	V	A	W	Q	A	D	Q	H	Q	S	L	R	T	S	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	F	D	K	E	R	P	V	V	A	A	G	A	V	G	L	A	Q	R	A	L	D	E	A	T	K	Y	A	L	E	R	K	T	F	G	K	L	L	V	E	H	Q	A	I	S	F	M	L	A	E	M	A	M	K	V	E	L	A	R	M	S	Y	Q	R	A	A	W	E	V	D	S	G	R	R	N	T	Y	Y	A	S
Template Known Secondary structure																														T	T		B		S	S	S	B	G	G	G	S																														T	T
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	K	L	Y	C	A	R	T	A	M	E	V	I	D	D	A	I	Q	I	M	G	G	L	G	Y	T	D	E	A	R	V	S	R	F	W	R	D	V	R	C	E	R	I	G	G	G	T	D	E	I	M	I	Y	V	A	G	R	Q	I	L	K	D	Y	Q	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	K	A	F	A	G	D	I	A	N	Q	L	A	T	D	A	V	Q	I	L	G	G	N	G	F	N	T	E	Y	P	V	E	K	L	M	R	D	A	K	I	Y	Q	I	Y	G	G	T	S	Q	I	Q	R	L	I	V	A	R	E	H	I	D	K	Y	K	N
Template Known Secondary structure																						T					T	S	T	T	S	S									G	G	G	G	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions