Job Description P37626 Confidence 99.81% Date Thu Jan 5 11:55:59 GMT 2012 Rank 6 Aligned Residues 225 % Identity 20% Template c3h9iB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:cation efflux system protein cusb; PDBTitle: crystal structure of the membrane fusion protein cusb from escherichia2 coli Resolution 3.40 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.				.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																			.	.	.																		.
Query SS confidence																			.	.	.																		.
Query Sequence		P	A	G	V	P	E	G	F	A	V	S	N	G	R	I	E	A	.	.	.	T	E	V	D	I	A	S	K	I	A	G	R	I	D	T	I	L	.	V	K	E	G	K	F	V	R	E	G	E	V	L	A	K	M	D	T	R	V	L	Q	E	Q	R	L	E	A	I	A	Q	I	K	E	A	Q	S	A	V	A	A	A
Query Conservation																			.	.	.																		.
Alig confidence																			.	.	.																		.
Template Conservation
Template Sequence		T	R	G	P	L	T	F	A	Q	S	F	P	A	N	V	S	Y	N	E	Y	Q	Y	A	I	V	Q	A	R	A	A	G	F	I	D	K	V	Y	P	L	T	V	G	D	K	V	Q	K	G	T	P	L	L	D	L	T	I	P	D	W	V	E	A	Q	S	E	Y	L	L	L	R	E	T	G	G	T	A	T	Q	T	E
Template Known Secondary structure		B																B		T	T									S									S			S	S					T	T																								S
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	L	L	E	Q	R	Q	S	E	T	R	A	A	Q	S	L	V	N	Q	R	Q	A	E	L	D	S	V	A	K	R	H	T	R	S	R	S	L	A	Q	R	G	A	I	S	A	Q	Q	L	D	D	D	R	A	A	A	E	S	A	R	A	A	L	E	S	A	K	A	Q	V	S	A	S	K	A	A	I	E	A	A
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	I	L	E	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	N	I	I	Q	A	Q	T	R	V	E	A	A	Q	A	T	E	R	R	I	A	A	D	I	D	D	S	E	L	K	A	P	R	D	G	R	V	Q	Y	R	V	A	E	P	G	E	V	L	A	A	G	G	R	V	L	N	M	V	D	L	S	D	V	Y	M	T	F	F	L	P	T	E	Q	A	G	T	L	K	L
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	R	L	A	G	M	P	E	A	D	I	R	R	L	I	A	T	Q	K	I	Q	T	R	F	T	L	K	A	P	I	D	G	V	I	T	A	F	D	L	R	A	G	M	N	I	A	K	D	N	V	V	A	K	I	Q	G	M	D	P	V	W	V	T	A	A	I	P	E	S	I	A	W	L	V	K	D
Template Known Secondary structure		.	.	.	.	.				T																								S	S					S						S	S					S											S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	E	A	R	L	I	L	D	A	A	P	D	L	R	I	P	A	T	I	S	F	V	A	S	V	A	Q	F	T	P	K	T	V	E	T	S	D	E	R	L	K	L	M	F	R	V	K	A	R	I	P	P	E	L	L	Q	Q	H	L	E	Y	V	K	T	G	L	P	G	V	A	W	V	R	V	N	E	E	L	P
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.																						.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.																						.	.
Template Sequence		A	S	Q	F	T	L	T	V	P	A	R	P	D	K	T	L	T	I	R	K	W	T	L	L	P	G	V	D	A	A	T	R	T	.	.	.	.	.	.	.	.	.	.	.	L	Q	L	R	L	E	V	D	.	.	.	.	.	N	A	D	E	A	L	K	P	G	M	N	A	W	L	Q	L	N	T	A	S	E	.	.
Template Known Secondary structure		G	G	G						S	S				S															T	T	T	T		.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.			S	S				T	T												S	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.																						.	.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.												.	.	.	.	.	.	300	.						.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		345	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	P	D	D	L	V	V	R
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	P	M	L	L	I	P
Template Known Secondary structure		.	.
Template Predicted Secondary structure		.	.
Template SS confidence
				323	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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