Job Description P37626 Confidence 99.96% Date Thu Jan 5 11:55:59 GMT 2012 Rank 1 Aligned Residues 263 % Identity 23% Template c3fppB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:macrolide-specific efflux protein maca; PDBTitle: crystal structure of e.coli maca Resolution 2.99 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		P	A	G	V	P	E	G	F	A	V	S	N	G	R	I	E	A	.	T	E	V	D	I	A	S	K	I	A	G	R	I	D	T	I	L	V	K	E	G	K	F	V	R	E	G	E	V	L	A	K	M	D	T	R	V	L	Q	E	Q	R	L	E	A	I	A	Q	I	K	E	A	Q	S	A	V	A	A	A	Q	A	L
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		R	P	G	D	L	Q	Q	S	V	L	A	T	G	K	L	D	A	L	R	K	V	D	V	G	A	Q	V	S	G	Q	L	K	T	L	S	V	A	I	G	D	K	V	K	K	D	Q	L	L	G	V	I	D	P	E	Q	A	E	N	Q	I	K	E	V	E	A	T	L	M	E	L	R	A	Q	R	Q	Q	A	E	A	E
Template Known Secondary structure																											S	S											T	T		B			T	T
Template Predicted Secondary structure
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	Q	R	Q	S	E	T	R	A	A	Q	S	L	V	N	Q	R	Q	A	E	L	D	S	V	A	K	R	H	T	R	S	R	S	L	A	Q	R	G	A	I	S	A	Q	Q	L	D	D	D	R	A	A	A	E	S	A	R	A	A	L	E	S	A	K	A	Q	V	S	A	S	K	A	A	I	E	A	A	R	T	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	L	A	R	V	T	Y	S	R	Q	Q	R	L	A	Q	T	Q	A	V	S	Q	Q	D	L	D	N	A	A	T	E	M	A	V	K	Q	A	Q	I	G	T	I	D	A	Q	I	K	R	N	Q	A	S	L	D	T	A	K	T	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	S			S	T	T								T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																							122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.				.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																																																				.	.	.
Query SS confidence																																																				.	.	.
Query Sequence		I	I	Q	A	Q	T	R	V	E	A	A	Q	A	T	E	R	R	I	A	A	D	I	D	D	S	E	L	K	A	P	R	D	G	R	V	Q	Y	R	V	A	E	P	G	E	V	L	A	A	G	G	.	.	.	R	V	L	N	M	V	D	L	S	D	V	Y	M	T	F	F	L	P	T	E	Q	A	G	T	L	K	L
Query Conservation																																																				.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	D	Y	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	A	P	M	A	G	E	V	T	Q	I	T	T	L	Q	G	Q	T	V	I	A	A	Q	Q	A	P	N	I	L	T	L	A	D	M	S	A	M	L	V	K	A	Q	V	S	E	A	D	V	I	H	L	K	P
Template Known Secondary structure				T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S		S	B						S		S	S						S	S	S																					T	T	T	T	T	S			S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		181	.	.	.	.																						.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	E	A	R	L	I	L	D	A	A	P	D	L	R	I	P	A	T	I	S	F	V	A	S	V	A	Q	F	T	P	K	T	V	E	T	S	D	E	R	L	K	L	M	F	R	V	K	A	R	I	P	P	E	L	L	Q	Q	H	L	E	Y	V	K	T	G	L	P	G	V	A	W	V	R	V	N	E	E	L	P
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.											.	.	.	.	.																						.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.											.	.	.	.	.																						.	.
Template Sequence		G	Q	K	A	W	F	T	V	L	G	D	Q	L	T	R	Y	E	G	Q	I	K	D	V	L	P	T	P	E	K	V	N	D	A	.	.	.	.	.	.	.	.	.	I	F	Y	Y	A	R	F	E	V	P	.	.	.	.	.	N	P	N	G	L	L	R	L	D	M	T	A	Q	V	H	I	Q	L	T	D	V	.	.
Template Known Secondary structure		S								T	T	S	S	S										B		S	S				S	S	S	S	.	.	.	.	.	.	.	.	.											.	.	.	.	.			S	S				T	T													.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.											.	.	.	.	.																						.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.										.	.	.	.	.	.	.	280	.	.						.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		345	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		W	P	D	D	L	V
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	K	N	V	L	T
Template Known Secondary structure		.
Template Predicted Secondary structure		.
Template SS confidence
			304	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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