Job Description P37626 Confidence 99.90% Date Thu Jan 5 11:55:59 GMT 2012 Rank 3 Aligned Residues 226 % Identity 26% Template c2f1mA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:acriflavine resistance protein a; PDBTitle: conformational flexibility in the multidrug efflux system protein acra Resolution 2.71 Å

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		36	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		F	A	V	S	N	G	R	I	E	A	.	T	E	V	D	I	A	S	K	I	A	G	R	I	D	T	I	L	V	K	E	G	K	F	V	R	E	G	E	V	L	A	K	M	D	T	R	V	L	Q	E	Q	R	L	E	A	I	A	Q	I	K	E	A	Q	S	A	V	A	A	A	Q	A	L	L	E	Q	R	Q	S	E
Query Conservation												.
Alig confidence												.																																																														.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		T	T	E	L	P	G	R	T	S	A	Y	R	I	A	E	V	R	P	Q	V	S	G	I	I	L	K	R	N	F	K	E	G	S	D	I	E	A	G	V	S	L	Y	Q	I	D	P	A	T	Y	Q	A	T	Y	D	S	A	K	G	D	L	A	K	A	Q	A	A	A	N	I	A	Q	L	.	.	.	.	.	.	.	.
Template Known Secondary structure												S								S	S									S		T	T					T	T	S		S																																.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	A	A	Q	S	L	V	N	Q	R	Q	A	E	L	D	S	V	A	K	R	H	T	R	S	R	S	L	A	Q	R	G	A	I	S	A	Q	Q	L	D	D	D	R	A	A	A	E	S	A	R	A	A	L	E	S	A	K	A	Q	V	S	A	S	K	A	A	I	E	A	A	R	T	N	I	I	Q	A	Q	T	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	N	R	Y	Q	K	L	L	G	T	Q	Y	I	S	K	Q	E	Y	D	Q	A	L	A	D	A	Q	Q	A	N	A	A	V	T	A	A	K	A	A	V	E	T	A	R	I	N	L	A	Y	T	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	T	T	S	T	T																																				T	T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
																						125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence		V	E	A	A	Q	A	T	E	R	R	I	A	A	D	I	D	D	S	E	L	K	A	P	R	D	G	R	V	Q	Y	R	V	A	E	P	G	E	V	L	A	A	G	G	R	.	.	V	L	N	M	V	D	L	S	D	V	Y	M	T	F	F	L	P	T	E	Q	A	G	T	L	K	L	G	G	E	A	R	L	I	L
Query Conservation																																														.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.																					.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	T	S	P	I	S	G	R	I	G	K	S	N	V	T	E	G	A	L	V	Q	N	G	Q	A	T	A	L	A	T	V	Q	Q	L	D	P	I	Y	V	D	V	T	Q	S	S	N	D	.	.	.	.	.	X	K	A	K	V	S	L	I	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S								S	S		T	T					T	T		S	S		S							S	S									T	T	T	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.
Template SS confidence
																				175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.						.	.	.	.	.	.	.	230	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	A	P	D	L	R	I	P	A	T	I	S	F	V	A	S	V	A	Q	F	T	P	K	T	V	E	T	S	D	E	R	L	K	L	M	F	R	V	K	A	R	I	P	P	E	L	L	Q	Q	H	L	E	Y	V	K	T	G	L	P	G	V	A	W	V	R
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template Sequence		S	D	G	I	K	F	P	Q	D	G	T	L	E	F	S	D	V	T	V	D	Q	T	T	G	S	.	.	.	.	.	.	.	.	.	.	.	I	T	L	R	A	I	F	P	.	.	.	.	.	N	P	D	H	T	X	X	P	G	X	F	V	R	A	R	L	E
Template Known Secondary structure		S	S	S		B		S	S		B			S	S	S						S	S	S			.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.		T	T					S	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.												.	.	.	.	.	.	280	.						.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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