 |
Job Description | P75679 | Confidence | 75.67% | Date | Thu Jan 5 12:12:58 GMT 2012 |
Rank | 225 | Aligned Residues | 58 |
% Identity | 10% | Template | c2da2A_ |
PDB info |
PDB header:transcription | Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein; |
PDBTitle: solution structure of the second homeobox domain of at-2 binding transcription factor 1 (atbf1)
|
Resolution | UNK |
|
  |   |
13 | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | |
|
|
|
. | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | K | K | R | N | F | S | A | E | F | K | R | E | S | A | Q | L | V | V | D | Q | N | Y | T | . |
. |
. |
. |
V | A | D | A | A | S | A | M | D | V | G | L | S | T | M | T | R | W | V | K | Q | L | R | D | E | R | Q | G | K | T | P | K | A | S |
Query Conservation |   |
|
|
|
|   |
|
|   |
|
|
|   |   |
|
|   |   |   |
|
|   |
|   |
| . | . | . | . |   |   |
|
|
|   |   |
|
|
|
|   |
|
|
|   |   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |   |   |
|   |   |
|   |   |   |
|
|   |   |
|   |   |
|   |   |
|   |   |   |   |   |   |   |
|
|   |   |   |   |
|   |   |   |
|
|   |   |
|
|   |
|
|
|   |
|   |
|
|   |   |   |   |   |
|
Template Sequence |   |
S | S | R | T | R | F | T | D | Y | Q | L | R | V | L | Q | D | F | F | D | A | N | A | Y | P | K | D | D | E | F | E | Q | L | S | N | L | L | N | L | P | T | R | V | I | V | V | W | F | Q | N | A | R | Q | K | A | R | K | S | G | P | S | S | G |
Template Known Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S |
|
|  |  |  |  |  |  |  |  |  |  | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| S | S |
|
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
9 | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|