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Job DescriptionP0AAZ4
Confidence100.00%DateThu Jan 5 11:14:11 GMT 2012
Rank1Aligned Residues414
% Identity100%Templatec3pvsA_
PDB info PDB header:recombinationChain: A: PDB Molecule:replication-associated recombination protein a; PDBTitle: structure and biochemical activities of escherichia coli mgsa
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30.........40.........50.........60.........70.........80.........90...
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Query Sequence  QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIRE
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Template Sequence  QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIRE
Template Known Secondary structure 

T


STTT

S
STTST



STTSSTT
TTT

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   14.....20.........30.........40.........50.........60.........70.........80.........90...
 
   94.....100.........110.........120.........130.........140.........150.........160.........170...
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Query Sequence  AIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQV
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Template Sequence  AIERARQNRNAGRRTILFVDEVHRF. . . . . . AFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQV
Template Known Secondary structure  TT

TTT

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TTS
SS
GGGSS
TT




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   94.....100.........110........ .120.........130.........140.........150.........160.......
 
   174.....180.........190.........200.........210.........220.........230.........240.........250...
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Query Sequence  LTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGD
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Template Sequence  LTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER. . . SARKGD
Template Known Secondary structure 
TTTSSTTSS


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S
B
TTS


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   174.....180.........190.........200.........210.........220.........230.........240.... .....250
 
   254.....260.........270.........280.........290.........300.........310.........320.........330...
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Query Sequence  RFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAI
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Template Sequence  RFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAI
Template Known Secondary structure  TT
TT

TTGGG
TS
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   254.....260.........270.........280.........290.........300.........310.........320.........330...
 
   334.....340.........350.........360.........370.........380.........390.........400.........410...
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Query Sequence  AQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQT
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Template Sequence  AQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPT. . . . . . . . . . EYRYAHDEANAYAAGEVYFPPEIAQT
Template Known Secondary structure  S



S





GGGSSS

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GGGSGGG

TT


S
GGGTT
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   334.....340.........350.........360.........370....... ..380.........390.........400...
 
   414.....420.........430.........440......
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Query Sequence  RYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRY
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Template Conservation    
       
                      
Template Sequence  RYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRY
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SSTTT
S



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   414.....420.........430.........440......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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