Job Description P0AAZ4 Confidence 94.96% Date Thu Jan 5 11:14:11 GMT 2012 Rank 489 Aligned Residues 123 % Identity 16% Template c3iuyB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx53; PDBTitle: crystal structure of ddx53 dead-box domain Resolution 2.40 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.					.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	K	P	L	P	R	A	I	E	A	G	H	L	H	S	M	I	L	W	G	P	P	G	T	G	K	T	T	L	A	E	V	I	A	R	Y	A	.	.	.	.	N	A	D	V	E	R	I	S	A	V	T	S	G	V	K	E	I	R	E	A	I	E	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																								.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.																									.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.
Template Sequence		Q	S	Q	A	W	P	I	I	L	Q	G	.	.	.	I	D	L	I	V	V	A	Q	T	G	T	G	K	T	L	S	Y	L	M	P	G	F	I	H	L	D	S	N	G	P	G	M	L	V	L	T	P	T	R	E	L	A	L	H	V	E	A	E	C	S	K	Y	S	Y	K	G	L	K	S	I	C	I	Y	G	V	D
Template Known Secondary structure											T	T	.	.	.									T	T	S															T					S						S	S																	T	T										S
Template Predicted Secondary structure													.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.				.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
																99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.					.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.																													.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.																													.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	N	R	N	A	G	R	R	T	I	L	F	V	D	E	V	H	R	F	.	.	.	.	N	K	S	Q	Q	D	A	F	L	P	H	I	E	D	G	T	I	T	F	I	G	A	T	T	E	N	P	S	.	F	E	L	N	S	A	L	L	S	R	A	R	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.																													.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.																													.
Template Conservation
Template Sequence		I	I	I	A	T	P	G	R	L	N	D	L	Q	M	N	N	S	V	N	L	R	S	I	T	Y	L	V	I	D	E	A	D	K	M	L	D	M	E	F	E	P	Q	I	R	K	I	L	L	D	V	R	P	D	R	Q	T	V	M	T	S	A	T	W	P	D	T	V	R	Q	L	A	L	S	Y	L	K	D	P	M	I
Template Known Secondary structure																T	T		S			T	T															T	T												S		S	S								S	S														S	S
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
		160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Y	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		437	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions