|   |
52 | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | |
|
|
|
|
|
. | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |
|  |  |  |
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | M | I | L | W | G | P | P | G | T | G | K | T | T | L | A | E | V | I | A | R | Y | A | N | A | D | V | E | R | I | S | A | V | T | S | G | V | K | E | I | R | E | A | I | E | R | A | R | Q | N | R | N | A | . |
. |
. |
. |
. |
. |
G | R | R | T | I | L | F | V | D | E | V | H | R | F | N | K | S | Q | Q | D | A |
Query Conservation |   |
|
|
|
|   |
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|   |   |
|   |   |   |   |
|
|
|
|
|
|   |   |   |   |   |
|
|
|   |
|
|   |   |
|   |   |   |   |   |   | . | . | . | . | . | . |   |   |   |   |
|
|
|
|
|
|
|   |   |
|   |
|   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |   |   |   |   |   |   |
| . |
|   |   |   |   |   |
|   |   |   |
|   |   |
|
|
|
|   |
|   |   |
|   |   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|
|
|
|   |   |   |   |   |   |
|
Template Sequence |   |
H | V | L | L | A | G | Y | P | V | V | C | S | E | I | L | H | H | V | L | D | H | L | A | P | . |
R | G | V | Y | V | D | L | R | R | T | E | L | T | D | L | T | A | V | L | K | E | D | R | G | W | A | L | R | A | G | A | A | V | L | A | D | G | G | I | L | A | V | D | H | L | E | G | A | P | E | P | H | R | W | A |
Template Known Secondary structure |   |
|  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S | . | S |  |  |  |  |  | G | G | G |
|
|  |  |  |  | S |  |  |  |  |  | S | S | S |  |  |  |  |  |
|  |  |  |  | T | T | T | S |  |  |  |  |  |
|
| T | T |
|
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
241 | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | |
. | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . |
  |
  |   |
126 | . | . | . | 130 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 140 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | 150 | . | . | . | . | . | . | . | |
. | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |
|
|
|
|  |  |  | . | . | . | . | . | . | . | . | . |
|
|  |  |  |
|
|
|
| . |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | L | P | H | I | E | D | G | T | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | T | F | I | G | A | T | T | E | N | P | S | F | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
L | N | S | A | L | L | S | R | A | . |
R | V | Y | L | L | K | S | L | S | T | E | D | I | E | Q | V | L | T | Q | A | M | E | D | K | T | R | G |
Query Conservation |   |
|
|   |   |
|
|   |
|   | . | . | . | . | . | . | . | . | . | . | . |   |   |
|
|   |
|
|
|
|
|
|   |   |   | . | . | . | . | . | . | . | . | . |
|   |   |
|
|   |
|
|   | . |   |   |
|   |
|   |   |
|
|   |
|
|
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
| . | . |
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
Template Conservation |   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |
|
|
|
|
|
| . | . |
|
|   |   |   |   |   |   |   |   |
|
|
|   |
|   |   |   |
|
|
|
|
|
|
|
|   |   |
|   |
|   |   |   |
|   |
|
|
|
|
|   |
|
|   |
|   |   | . | . | . |
Template Sequence |   |
L | M | E | A | M | D | K | G | T | V | T | V | D | G | I | A | L | N | A | R | C | A | V | L | A | A | I | . |
. |
N | P | G | E | P | S | D | P | P | I | A | R | I | D | L | D | Q | D | F | L | S | H | F | D | L | I | A | F | L | G | V | P | S | Y | T | L | L | R | R | Y | L | L | Y | A | I | R | E | H | . |
. |
. |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | S |  |  |  |  | T | T |  |  |  |  |
|
|
|  |  |  |  |  |  | . | . |
|
|
|
|
|
| S |
| G | G | G | G |
|
| S |
|  |  |  |  | T | T |
| S |  |  |  |  | T | T |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  | . | . |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | |
|
. | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | |
|
|
  |
  |   |
185 | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | G | G | Q | D | I | V | L | P | D | E | T | R | R | A | I | A | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
L | V | N | G | D | A | R | R | A | L | N | T | L | E | M | M | A | D | M | A | E | V | D | D | S | G | K | R | V | L | K | P | E | L | L | T | E | I | A | G |
Query Conservation |   |
  |   |   |   |   |
|   |
|   |
|
|
|
|   |   |
|
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |
|   |
|
|   |
|   |
|
|
|   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |
|   |
|   |   |   |
|   |
Alig confidence |   |
. | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . |   |   |
|   |
|
|   |
|
|   |   |   |
|   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |
|
|
|
|
|
|
|
|
|
|   |
|
|
|   |
|
|   |   | . | . |
|
|   |
|
|
|   |   |
|
|   |
Template Sequence |   |
. |
. |
. |
P | A | P | E | L | T | E | E | A | R | K | R | L | E | H | W | Y | E | T | R | R | E | E | V | E | E | R | L | G | M | G | L | P | T | L | P | V | T | R | R | Q | L | E | S | V | E | R | L | A | K | A | H | A | R | M | R | L | S | D | D | . |
. |
V | E | P | E | D | V | D | I | A | A | E |
Template Known Secondary structure |   |
. | . | . | S |
|
|  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  | . | . |  |
|  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
. | . | . |
|
|
|  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . |
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
411 | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | |
|
. | . | . | . | . | . | . | . | . | 480 | . |
  |