Job Description P0AAZ4 Confidence 97.60% Date Thu Jan 5 11:14:11 GMT 2012 Rank 182 Aligned Residues 171 % Identity 16% Template c3crqA_ PDB info PDB header:transferase Chain: A: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: structure of trna dimethylallyltransferase: rna2 modification through a channel Resolution 2.20 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.												.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Query Sequence		L	H	S	M	I	L	W	G	P	P	G	T	G	K	T	T	L	A	E	V	I	A	R	Y	A	N	A	D	V	E	R	I	S	A	.	.	.	.	.	.	.	.	.	.	.	V	T	S	G	V	K	E	I	R	E	A	I	E	R	A	R	Q	N	R	N	A	G	R	R	T	I	L	F	V	D	E	.	.	.	.
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	P	A	I	F	L	M	G	P	T	A	A	G	K	T	D	L	A	M	A	L	A	D	A	L	P	C	E	L	I	S	V	D	S	A	L	I	Y	R	G	M	D	I	G	T	A	K	P	S	R	E	L	L	A	R	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	P	H	R	L	I	D	I	R	D	P	A
Template Known Secondary structure										S	T	T	S	S										T	T	S									T	T	T	T	B	T	T			T	T	T	T										S	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S	S		B		T	T
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60														.	.	.	.	.	.	.	.	.	70	.
						115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	V	H	R	F	N	K	S	Q	Q	D	A	F	L	P	H	I	E	D	G	T	I	T	F	I	G	A	T	T	E	N	P	S	F	E	L	N	S	A	L	L	S	R	A	R	V	Y	L	L	K	S	L	S	T	E	D	I	E	Q	V	L	T	Q	A	M	E	D	K	T	R	G	Y	G	G	Q	D	I
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																																																																				.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		E	S	Y	S	A	A	E	F	R	A	D	A	L	A	A	M	A	K	A	T	A	R	G	R	I	P	L	L	V	G	G	T	M	L	Y	Y	K	A	L	L	E	G	L	P	Y	T	V	A	Q	L	A	I	A	P	E	Q	R	Q	V	L	H	A	R	I	A	Q	R	F	R	Q	M	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S																					T	T								S														S										S	S																.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		191	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.							.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure														.						.	.	.	.	.	.
Query SS confidence														.						.	.	.	.	.	.
Query Sequence		V	L	P	D	E	T	R	R	A	I	A	E	.	L	V	N	G	D	.	.	.	.	.	.	A	R	R	A	L	N	T	L	E	M	M	A	D	M	A	E	V	D	D	S	G	K	R	V	L	K	P	E	L	L	T	E	I	A	G	E	R	S	A	R	F	D	N
Query Conservation														.						.	.	.	.	.	.
Alig confidence		.												.						.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Conservation		.																																									.	.	.	.	.	.	.
Template Sequence		.	L	E	Q	G	F	I	A	E	V	E	A	L	H	A	R	S	D	L	H	A	G	L	P	S	I	R	A	V	G	Y	R	Q	V	W	D	Y	L	D	G	K	.	.	.	.	.	.	.	L	S	Y	A	E	M	T	E	R	G	I	I	A	T	R	Q	L	A	K
Template Known Secondary structure		.				T										T		T	T			T	T	S	T	G	G	G	S	T	T									T	T	S	.	.	.	.	.	.	.	S
Template Predicted Secondary structure		.																																									.	.	.	.	.	.	.
Template SS confidence
			228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.								.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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