Job Description P0AAZ4 Confidence 98.78% Date Thu Jan 5 11:14:11 GMT 2012 Rank 110 Aligned Residues 122 % Identity 10% Template c3co5B_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative two-component system transcriptional response PDBTitle: crystal structure of sigma-54 interaction domain of putative2 transcriptional response regulator from neisseria gonorrhoeae Resolution 2.40 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		Q	H	L	L	A	A	G	K	P	L	P	R	A	I	E	A	G	H	L	H	S	M	I	L	W	G	P	P	G	T	G	K	T	T	L	A	E	V	I	A	R	Y	A	.	.	.	N	A	D	V	E	R	I	S	A	V	T	S	G	V	K	E	I	R	E	A	I	E	R	A	R	Q	N	R	N	A	G	R	R	T
Query Conservation																																													.	.	.
Alig confidence																					.	.																							.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.																																													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	I	Q	E	X	N	R	E	V	E	A	A	A	K	R	T	S	P	.	.	V	F	L	T	G	E	A	G	S	P	F	E	T	V	A	R	Y	F	H	K	N	G	T	P	W	V	S	P	A	R	V	E	Y	L	I	D	X	P	X	E	L	L	Q	K	.	.	.	.	.	.	.	.	.	.	.	A	E	G	G
Template Known Secondary structure																T		S	S		.	.							T	T									T	T			T	T	S						S	S	T	T													.	.	.	.	.	.	.	.	.	.	.	T	T	T	S
Template Predicted Secondary structure																					.	.																																													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.												.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.				.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.																.
Query SS confidence																												.	.	.																.
Query Sequence		I	L	F	V	D	E	V	H	R	F	N	K	S	Q	Q	D	A	F	L	P	H	I	E	D	G	T	.	.	.	I	T	F	I	G	A	T	T	E	N	P	S	F	E	L	.	N	S	A	L	L	S	R	A	R	V	Y	L	L	K	S	L	S
Query Conservation																												.	.	.																.
Alig confidence																												.	.	.																.
Template Conservation
Template Sequence		V	L	Y	V	G	D	I	A	Q	Y	S	R	N	I	Q	T	G	I	T	F	I	I	G	K	A	E	R	C	R	V	R	V	I	A	S	C	S	Y	A	A	G	S	D	S	C	E	E	K	L	A	G	L	F	S	E	S	V	V	R	I	P	P
Template Known Secondary structure									T	T																	T	T	T	T											T	T	T											S	S	S
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions