Job Description P0AAZ4 Confidence 99.92% Date Thu Jan 5 11:14:11 GMT 2012 Rank 33 Aligned Residues 208 % Identity 20% Template c3bosA_ PDB info PDB header:hydrolase regulator,dna binding protein Chain: A: PDB Molecule:putative dna replication factor; PDBTitle: crystal structure of a putative dna replication regulator hda2 (sama_1916) from shewanella amazonensis sb2b at 1.75 a resolution Resolution 1.75 Å

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		15	.	.	.	.	20	.	.	.		.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.					.																																																.	.	.
Query SS confidence											.					.																																																.	.	.
Query Sequence		P	L	A	A	R	M	R	P	E	.	N	L	A	Q	.	Y	I	G	Q	Q	H	L	L	A	A	G	K	P	L	P	R	A	I	E	A	G	H	L	H	S	M	I	L	W	G	P	P	G	T	G	K	T	T	L	A	E	V	I	A	R	Y	A	.	.	.	N	A	D	V	E	R	I	S	A	V	T	S	G	V	K
Query Conservation											.					.																																																.	.	.
Alig confidence											.					.									.	.	.																																					.	.	.
Template Conservation																									.	.	.
Template Sequence		S	L	P	V	H	L	P	D	D	E	T	F	T	S	Y	Y	P	G	N	D	E	L	I	.	.	.	G	A	L	K	S	A	A	S	G	D	G	V	Q	A	I	Y	L	W	G	P	V	K	S	G	R	T	H	L	I	H	A	A	C	A	R	A	N	E	L	E	R	R	S	F	Y	I	P	L	G	I	H	A	S	I
Template Known Secondary structure									T	T		S	T	T	T	S									.	.	.									T		S		S							S	T	T	S	S															T	T								G	G	G	G	G	G	S
Template Predicted Secondary structure																									.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.							120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.																														.	.											.	.	.
Query SS confidence																																.	.	.	.	.	.																														.	.											.	.	.
Query Sequence		E	I	R	E	A	I	E	R	A	R	Q	N	R	N	A	G	R	R	T	I	L	F	V	D	E	V	H	R	F	N	.	.	.	.	.	.	K	S	Q	Q	D	A	F	L	P	H	I	E	D	G	T	I	T	F	I	G	A	T	T	E	N	P	S	F	E	.	.	L	N	S	A	L	L	S	R	A	R	.	.	.
Query Conservation																																.	.	.	.	.	.																														.	.											.	.	.
Alig confidence					.	.	.	.	.	.	.																					.	.	.	.	.	.																														.	.											.	.	.
Template Conservation					.	.	.	.	.	.	.
Template Sequence		S	T	A	.	.	.	.	.	.	.	L	L	E	G	L	E	Q	F	D	L	I	C	I	D	D	V	D	A	V	A	G	H	P	L	W	E	E	A	I	F	D	L	Y	N	R	V	A	E	Q	K	R	G	S	L	I	V	S	A	S	A	S	P	X	E	A	G	F	V	L	P	D	L	V	S	R	X	H	W	G	L
Template Known Secondary structure			G	G	.	.	.	.	.	.	.	G	G	T	T	G	G	G	S	S						T	G	G	G	G	T	T																				S								S	S		T	T	T	T	T													S
Template Predicted Secondary structure					.	.	.	.	.	.	.
Template SS confidence
		94	.	.								.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	L	L	K	S	L	S	T	E	D	I	E	Q	V	L	T	Q	A	M	E	D	K	T	R	G	Y	G	G	Q	D	I	V	L	P	D	E	T	R	R	A	I	A	E	L	V	N	G	D	A	R	R	A	L	N	T	L	E	M	M	A	D	M	A	E	V	D	D	S	G	K	R	V	L	K	P	E	L	L	T
Query Conservation
Alig confidence																									.	.	.	.	.	.	.																																							.	.	.
Template Conservation																									.	.	.	.	.	.	.																																							.	.	.
Template Sequence		T	Y	Q	L	Q	P	X	X	D	D	E	K	L	A	A	L	Q	R	R	A	A	X	R	.	.	.	.	.	.	.	G	L	Q	L	P	E	D	V	G	R	F	L	L	N	R	X	A	R	D	L	R	T	L	F	D	V	L	D	R	L	D	K	A	S	X	V	H	Q	.	.	.	R	K	L	T	I	P	F	V	K
Template Known Secondary structure										G	G	G												T	.	.	.	.	.	.	.	T															T	T	T																				T	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.	.																																							.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.								190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.				.	.	230	.	.	.	.	.	.
		239	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	X	L	R
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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